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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCTTCCACTAGCAGTGCAGCTTTGGTTTCAGATTATGTTGGCTATCTTGAAAAGGGACAAATCCCTCCCAAGgtatattgtgtctaaatgggaagaccatatagttctcactgtccacttaaacccttattatctagtgattctaatttagtttataactatgacag

Basic information

species Glycine max
transcript GLYMA04G11550.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 13
lower sequence: AT1G36160.1 (Arabidopsis thaliana), 5'ss of exon 14
AAAGCTTCCACTAGCAGTGCAGCTTTGGTTTCAGATTATGTTGGCTATCTTGAAAAGGGACAAATCCCTCCCAAGgtatattgtgtctaaatgggaagaccatatagttctcactgtccacttaaacccttattatctagtgattctaatttagtttataactatgacag
||||| ||  | | |||||| ||| ||||||||||||| ||||| ||||| || ||||| ||||||||||| ||||||       || ||       || |      || |  || || | | |    ||| |    || |  ||||   |||  ||  |          
AAAGCATCAGCGACCAGTGCTGCTGTGGTTTCAGATTACGTTGGTTATCTGGAGAAGGGGCAAATCCCTCCAAAGgta------atccaataccagggatctc----ttttgcctttctagtaatgttcttgtagcttactttttctctcttaacttgcag---------

upper sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 14
AAAGCTTCCACTAGCAGTGCAGCTTTGGTTTCAGATTATGTTGGCTATCTTGAAAAGGGACAAATCCCTCCCAAGgtatattgtgtctaaatggga------agaccatatagttctcactgtccacttaaacccttattatctagtgattctaatttagtttataact--atgacag
||||| ||  |||||||||||||  |||||||||||||||| || |||||||||||||| ||||||||||||||||||| |||   | |||           ||    |  |  | |   ||||   | |     || |||| |||   || | |   ||| |   ||   ||  |||
AAAGCATCTGCTAGCAGTGCAGCAATGGTTTCAGATTATGTCGGTTATCTTGAAAAGGGGCAAATCCCTCCCAAGgtattttgctacgaaacatcctattttaggtacttgaaatttagatgtctgttcatctatttgttat-tagcagttattaacaagtgtgccacctaattgcag

upper sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S13_171V6.1 (Physcomitrella patens), 5'ss of exon 13
AAAGCTTCCACTAGCAGTGCAGCTTTGGTTTCAGATTATGTTGGCTATCTTGAAAAGGGACAAATCCCTCCCAAGgtatat---tgtgtctaaatgggaagaccatatagttctcactgtccacttaaacccttattatctagtgattctaattt-agtttataactatgacag--------------
|||||   ||     | |||||||   ||  | || ||  |||||||| | |||||||| |||||||| ||||||||||||   || ||    |     |  |     ||      |  |  | ||  |   | |||         || |||| | ||  | | | |   || |              
AAAGCAAGCAGGTTAATTGCAGCTCGTGTAACGGAGTACATTGGCTATTTGGAAAAGGGCCAAATCCCACCCAAGgtatatacatgagtacgcactttcatcctcggaagcagatgcacttgatttgtaggttcattgcaagagctttttaatctgagcctttgattgaaactggctttgccttgcag