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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCATAGCTGGGGTTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatacccctgaagtttttattcttcatgtattgtatttggggtggcaataatatacgtattttgactggttatgtttaaattgtcttcttacttgtatttggattgatccttttag

Basic information

species Glycine max
transcript GLYMA04G09080.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G09080.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 5'ss of exon 13
GAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCATAGCTGGGGTTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatacccctgaagtttttattcttcatgtattgtatttggggtggcaataatatacgtattttgactggttatgtttaaattgtcttcttacttgtatttggattgatccttttag
|| ||||| |||||||||||||| |||||||  || || |||||||| ||||| |  ||||| |||  ||| ||||| || |||||||||||| | | | || || |||    ||        | | |  ||         ||   ||| ||| ||  | |  |||| ||||   || || |||| || | | | |||| ||        
GAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAGgt-atttcacccgatgttacatttagattaacactatcatt-------tcatg-catatgtacttcaattttttatttttatcatg-ctgcttaatt-tttgtagatttat--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193511053|gb|FK468952.1|FK468952
EST:     GGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTACAGCAATCCTATAAAGTCAGTGATTCGTTTCCATTTA
genomic: GGGGTTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaataccc ... atccttttagGTACCCAGTACTTACAGCAATCCTATAAAGTCAGTGATTCGTTTCCATTTA
EST: gi|193531412|gb|FK483294.1|FK483294
EST:     GCTGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTACAGCAATCCTATAAAGTCAGTGATTCGTTTCCATTTA
genomic: GCTGGGGTTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaataccc ... atccttttagGTACCCAGTACTTACAGCAATCCTATAAAGTCAGTGATTCGTTTCCATTTA
EST: gi|208053243|gb|GD853576.1|GD853576
EST:     TAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTACAGCAATCCTATAAAGTCAGTGATTCGTTTTCCATTT
genomic: TAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaataccc ... atccttttagGTACCCAGTACTTACAGCAATCCTATAAAGTCAGTGATTCGTTT-CCATTT