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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCATAGCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatacccctgaagtttttattcttcatgtattgtgtatttggggtggcaataatatacatattttgactggttatgtttaaattgtcttcttacttgtatttggattgatccttttag

Basic information

species Glycine max
transcript GLYMA04G09070.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G09070.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv09s0002g03680.t01 (Vitis vinifera), 5'ss of exon 13
GAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCATAGCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatacccctgaagtttttattcttcatgtattgtgtatttggggtggcaataatatacatattttgactggttatgtttaaattgtcttcttacttgtatttggattgatccttttag
|||||||| ||||||||||||||||| || |  || || ||||| ||||| || |||| ||||||   |||| | |||||||||||||| ||||| |    || |  | |||     | ||| |||     | |  |     | |  |||  ||||||||  ||  |   ||| | ||| || |                            
GAATGGATAATGGAACAGTGGGAGAAAAACTTCTATATCAGTGCAATAGCAGGAGCTACTAATGGGAGCTCACTAGTTGTAATGTCTAAGGgttagt----ctaacatatttggc--tgatggatt-----tctatgacaaaatt--tatctatattttgcttgacttcatttca-ttgactccag--------------------------

upper sequence: GLYMA04G09070.2 (Glycine max), 5'ss of exon 13
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 5'ss of exon 13
GAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCATAGCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatacccctgaagtttttattcttcatgtattgtgtatttggggtggcaataatatacatattttgactggttatgtttaaattgtcttcttacttgtatttggattgatccttttag
|| ||||| |||||||||||||| |||||||  || || |||||||| || || || ||||| |||  ||| ||||| || |||||||||||| | | | || || |||    ||        | | |  ||||   |          |||  || ||  | |  |||| ||||   || || |||| || | | | |||| ||        
GAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAGgt-atttcacccgatgttacatttagattaacactat-catttcatgc---------atatgtacttcaattttttatttttatcatg-ctgcttaatt-tttgtagatttat--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193616008|gb|FK569670.1|FK569670
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTACAGCAATCCTATAAAGTCAGTGATTCGTTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaataccc ... atccttttagGTACCCAGTACTTACAGCAATCCTATAAAGTCAGTGATTCGTTTCCATTTA