1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTTCTATCTTGGGGTAGAACTTCTAAAATGTGAAGGCAGTGAATCCATTCTCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGgttatttctttattcccacttatgctaataaatttcatttgtgatgttctacactactacttttgtaagaatttgattatttttttttaaatggatgtca...
species | Glycine max |
transcript | GLYMA04G09000.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAG GCATTACCCGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAGEST: gi|208186467|gb|GD983050.1|GD983050
genomic: TCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGgttatttctt ... tttttgccagGCATTACCCGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAG
EST: CAAGTCCCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTACTTTAAAG GCATTACCCGTTTTCACGEST: gi|208197450|gb|GD997173.1|GD997173
genomic: CAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCT-CTTTAAAGgttatttctt ... tttttgccagGCATTACCCGTTTTCACG
EST: TCAAGTCCCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAG GCATTACCCGTTTTCAEST: gi|193362602|gb|FK325356.1|FK325356
genomic: TCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGgttatttctt ... tttttgccagGCATTACCCGTTTTCA
EST: TCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAG GCATTAACCCGTTTTCACGTTTGCAAEST: gi|207773170|gb|GD743636.1|GD743636
genomic: TCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGgttatttctt ... tttttgccagGCATTA-CCCGTTTTCACGTTTGCAA
EST: TCAGATGCTAGTTTTTGTTGCTGCTCTTTAAAG GCATTACCCGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAGEST: gi|208060371|gb|GD856223.1|GD856223
genomic: TCAGATGC-AG-TTTTG-TGCTGCTCTTTAAAGgttatttctt ... tttttgccagGCATTACCCGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAG
EST: TCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAG GCATTACCCGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTTEST: gi|193356332|gb|FK323045.1|FK323045
genomic: TCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGgttatttctt ... tttttgccagGCATTACCCGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTT
EST: TCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAG GCATTACCCGTTTTCACGTTTGCAAEST: gi|26057413|gb|CA800327.1|CA800327
genomic: TCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGgttatttctt ... tttttgccagGCATTACCCGTTTTCACGTTTGCAA
EST: TCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAG GCATTACCCGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAGEST: gi|193356289|gb|FK320552.1|FK320552
genomic: TCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGgttatttctt ... tttttgccagGCATTACCCGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAG
EST: TCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAG GCATTACCCGTTTTCACGTTTGCAAEST: gi|193518039|gb|FK476968.1|FK476968
genomic: TCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGgttatttctt ... tttttgccagGCATTACCCGTTTTCACGTTTGCAA
EST: TCAAGTCTCTTTGGCATCACNCAGATGCAGTTTTGTGCTGCTCTTTAAAG GCATTACCCGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAGEST: gi|208144355|gb|GD942106.1|GD942106
genomic: TCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGgttatttctt ... tttttgccagGCATTACCCGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAG
EST: TCAAGTCCCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAG GCATTACCCGTTTTCACGEST: gi|208269640|gb|GE071698.1|GE071698
genomic: TCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGgttatttctt ... tttttgccagGCATTACCCGTTTTCACG
EST: TCAAGTCTCTTTGGCATCACTCGGATGCAGTTTTGTGCTGCTCTTTAAAG GCATTACCCGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAGEST: gi|208314940|gb|GE115270.1|GE115270
genomic: TCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGgttatttctt ... tttttgccagGCATTACCCGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAG
EST: CAAGTCCCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAAG GCATTACCCGTTTTCACG
genomic: CAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAA-Ggttatttctt ... tttttgccagGCATTACCCGTTTTCACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTATCTTGGGGTAGAACTTCTAAAATGTGAAGGCAGTGAATCCATTCTCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGgttatttctttattcccacttatgctaataaatttcatttgtgatgttctacactactacttttgtaagaatttgattatttttttttaaatggatgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT