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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTAGGAGGGTTCCTCATGAATTCAAAATAGCATGCTTAGAGgttagtttcccgctgctacatattacaatgatcatattacattcataatgttattaaagtctatttgaatttttatgtcatcag

Basic information

species Glycine max
transcript GLYMA04G04060.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G04060.1 (Glycine max), 5'ss of exon 13
lower sequence: AT5G42870.2 (Arabidopsis thaliana), 5'ss of exon 8
TTATTAGGAGGGTTCCTCATGAATTCAAAATAGCATGCTTAGAGgttagtttcccgctgctacatattacaatgatcatattacattcataatgttattaaagtctatttgaatttttatgtcatcag---
| ||||| || |  |||||||||||||| || || |||||||||||||||||   || | |   | |||      |   | | |     |  | | |   | || ||  |   |||||     ||      
TAATTAGAAGAGCACCTCATGAATTCAAGATTGCTTGCTTAGAGgttagttttatgcgggt-ttttttatgtctgttgaact-ctcatgtcctctgaactacgtttaactcggtttttccaaaatatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258782|gb|BE346929.1|BE346929
EST:     GAATTCAAAATAGCATGCTTAGAG                         GACATCAAGGCACTTTTTCCTTCTGATAGCAGTCCATTCTATGCTGGTTTT
genomic: GAATTCAAAATAGCATGCTTAGAGgttagtttcc ... atgtcatcagGACATCAAGGCACTTTTTCCTTCTGATAGCAGTCCATTCTATGCTGGTTTT