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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAGTTCTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCCTATGGATGTCGTGATCCTTCATGTAGGTGGCTATTAgtagaatgtattcaacaggattagtcttcttttctattaattgaattgacttaaattatatgtgtgtgcaatatttattattacagggatgcttctacaacaggtttcataaaagtgcgtag

Basic information

species Glycine max
transcript GLYMA04G03010.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G03010.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os03g14690.1 (Oryza sativa), 5'ss of exon 12
-----------------------------AATGAGTTCTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCCTATGGATGTCGTGATCCTTCATGTAGGTGGCTATTAgtagaatgtattcaacaggattagtcttcttttctattaattgaattgacttaaattatatgtgtgtgcaatatttattattacagggatgcttctacaacaggtttcataaaagtgcgtag
                             ||||| || ||||||||||||||||| || |||||   |||||| |||| ||| ||||||||||| ||| |||       |  | || || |  ||||  |  |   || | | |  ||||   |        ||  | ||||  |    | | ||| |  ||   |   |                                
TCTTTTCAATCTATACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGAGCTTTTTGGTAAATCTGCTTATGCATGCCGTGATCCTTCTTGTGGgt-------aagaaaaagtttcaaacaaaaccacgtttttatccctttaaaaaag-------aatatttatgcctacttattgtttgtc-ttgtggatttag------------------------------

upper sequence: GLYMA04G03010.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G104418_T01 (Zea mays), 5'ss of exon 3
-----------------------------AATGAGTTCTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCCTATGGATGTCGTGATCCTTCATGTAGGTGGCTATTAgtagaatgtattcaacaggattagtcttcttttctattaattgaattgacttaaattatatgtgtgtgcaatatttattattacagggatgcttctacaacaggtttcataaaagtgcgtag
                             ||||| || ||||||||||||||||  || |||||   ||||||||||| ||| |||||| |||| |||||||       || | |||| | | || |    ||   | ||| | |||| || ||| ||         | || | | ||    ||| |||    ||    || |  ||                         
TTTTTTCAATCTACACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAGgta------aggaaaatgaaataaataaaccta---tgcttatttatttatagaactg--------cacatttatctggctcattaatttccccact--tgttcatag------------------------

upper sequence: GLYMA04G03010.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv18s0001g13410.t01 (Vitis vinifera), 5'ss of exon 12
-----------------------------AATGAGTTCTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCCTATGGATGTCGTGATCCTTCATGTAGGTGGCTATTAgtagaatgtattcaacaggattagtcttct-tttctattaattgaattgacttaaattatatgtgtgtgcaatatttattattacagggatgcttctacaacaggtttcataaaagtgcgtag
                             ||||| ||||| ||||| || |||||||||||||| || |||||||||| |||||  || ||||| || ||||          |  | | | | || |  |||  | | |    | | ||  |   |   | ||  ||||  |       |  | |||  | || |||                                    
TGTTCTCAATATACACAGGATTGATATATAATGAATTCTTTTCTGTCCCTTTTGAACTATTTGGGCCCTCTGCCTATGAATGTCCCGACCCTTCCTGCAGgtca--------aacaagcacttaagaaaattgttatgccaccttttttcctcccaactatttgtattacttacactcact-ttttttctgttccag------------------------------------