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ATGAACTTTATCGCTCTGACTTCTTTCCTGGATTAGGATGGATGCTGGCCAGATCTACATGGAATGAGCTATCACCAAAATGGCCTAAAGCatatccttaatatttcatacattcttgtttgtgtctgccatatttgtttattgggagtattccaaataagtaactcttggcaaaaatatttatcatataa...
species | Glycine max |
transcript | GLYMA04G00200.1 |
intron # | 13 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: ATGCTGGCCAGATCTACATGGAATGAGCTATCACCAAAATGGCCTAAAGC TTACTGGGATGACTGGTTGAGACTTAAAGAGAATCATAAAGGACGACAGTTEST: gi|6913097|gb|AW394627.1|AW394627
genomic: ATGCTGGCCAGATCTACATGGAATGAGCTATCACCAAAATGGCCTAAAGCatatccttaa ... aaaatttcacTTACTGGGATGACTGGTTGAGACTTAAAGAGAATCATAAAGGACGACAGTT
EST: CATGGAATGAGCTATCACCAAAATGGCCTAAAGC TTACTGGGATGACTGGTTGAGACTTAAAGAGAATCATAAAGGACGACAGTTEST: gi|14011124|gb|BG726055.1|BG726055
genomic: CATGGAATGAGCTATCACCAAAATGGCCTAAAGCatatccttaa ... aaaatttcacTTACTGGGATGACTGGTTGAGACTTAAAGAGAATCATAAAGGACGACAGTT
EST: ATGCTGGCCAGATCTACATGGAATGAGCTATCACCAAAATGGCCTAAAGC TTACTGGGATGACTGGTTGAGACTTAAAGAGAATCATAAAGGACGACAGTT
genomic: ATGCTGGCCAGATCTACATGGAATGAGCTATCACCAAAATGGCCTAAAGCatatccttaa ... aaaatttcacTTACTGGGATGACTGGTTGAGACTTAAAGAGAATCATAAAGGACGACAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGAACTTTATCGCTCTGACTTCTTTCCTGGATTAGGATGGATGCTGGCCAGATCTACATGGAATGAGCTATCACCAAAATGGCCTAAAGCatatccttaatatttcatacattcttgtttgtgtctgccatatttgtttattgggagtattccaaataagtaactcttggcaaaaatatttatcatataa
- - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcaaaaa