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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACCTTGTCCGGTCACACTGAACTGCGAACCAATGCCATCATGATCACCAGCACCATTACTGTTGTGCTTGTCAGCACAATGgtaagacgcatgacgaatgcttcttgtaaatttgtttgaaatttcatggttttgttaataaggagattttgctttttgcttcgttcatgattactcctag...

Basic information

species Glycine max
transcript GLYMA03G40290.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40290.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 5'ss of exon 14
TTCACCTTGTCCGGTCACACTGAACTGCGAACCAATGCCATCATGATCACCAGCACCATTACTGTTGTGCTTGTCAGCACAATGgtaagacgcatgacgaatgcttcttgtaaatttgtttgaaatttcatggttttgttaataaggagatttt-----gctttttgcttcgttcatgattactcctag
||||||   || ||||| |||||| |||||| |||||| |||||||||||||||||  | | |||||| ||  ||||||||||||||||     | | |  | ||   ||| | | | || ||   || ||  | |  | |  | |   ||||         | ||| |   ||  ||   |||  |  
TTCACCGCATCTGGTCATACTGAATTGCGAATCAATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATGgtaagg-atgtaatgctttctctctgttattatcttggatggtt-attttctgctcagcaggtgtatttctagcaatctgttgatagatttgtg--cacttttg-

upper sequence: GLYMA03G40290.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G063492_T01 (Zea mays), 5'ss of exon 14
TTCACCTTGTCCGGTCACACTGAACTGCGAACCAATGCCATCATGATCACCAGCACCATTACTGTTGTGCTTGTCAGCACAATGgtaagacgcatgacgaatgcttcttgtaaatttgtttgaaatttcatggttttgttaataaggagattttgctttttgcttcgttcatgattactcctag----
|| ||    || |||||||||||| |||||  |||||| |||||||||||||||||  ||| |||||| ||  |||||||||||||||| ||  ||    |  ||| || | |  |  | |     ||||| | | ||    | |     |   ||      | | |   ||||     || ||    
TTTACAGCATCTGGTCACACTGAAGTGCGAGTCAATGCTATCATGATCACCAGCACAGTTATTGTTGTTCTATTCAGCACAATGgtaagccgtctgctatac-cttattatta--tcatcttgttcttcatagatgtgcgtgttacatagtccagcacaaaacat-gacaatgaaacggccaagggta

upper sequence: GLYMA03G40290.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 13
TTCACCTTGTCCGGTCACACTGAACTGCGAACCAATGCCATCATGATCACCAGCACCATTACTGTTGTGCTTGTCAGCACAATGgtaagac---------gcatgacgaa-tgcttcttgtaaatttgtttgaaatttcatggttttgttaataaggagattttgctttttgcttcgttcatgattactcctag
||  |   ||| || || ||| || ||||| | ||||| |||||||| ||||||||||| || ||||| ||| |||||||| |||||||           |||| || || | || ||| ||      ||||    ||  |   || |  | ||   ||||||   | ||| | || ||    |||        
TTTGCAAGGTCGGGACATACTCAATTGCGATCAAATGCAATCATGATTACCAGCACCATAACAGTTGTTCTTTTCAGCACAGTGgtaagttctcctgcctgcatcacaaaatactgcttatactagactttggtggtttct--cttgggcattagaaagattt--atatttccatcattttgaattca------