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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAATgtaagtttctgatttgtatactttttaaaaaaaatatatgtatatgtttgggttactactaattttttagttctatattaaatatgaactaatagtaaac...

Basic information

species Glycine max
transcript GLYMA03G40000.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40000.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv14s0128g00100.t01 (Vitis vinifera), 5'ss of exon 23
TGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAATgtaagtttc-tgat-ttgtatactttttaaaaaaaatatatgtatatgtttgggttactactaattttttagttctatattaaatatgaactaatagtaaac
||||||||||||||||||| || || ||||| ||||||   |||||   ||| || |||||||| ||||| |||||||||||||||||||| ||| |  | || |||  |  ||  |      ||||| |       ||  ||  |  || |||||  |||  |      |     | |  |||  | 
TGCTTGCTGAATGGAAGCCACCCGTCTATGACAATACAAAGGGTATTACTCTGGTGACTGCTACTACACGTCGTAATTCACCAAATgtaaggttcatagtgttctatgttacttttagttgcaatatgcaatgaaggggaatataaagaactttttgcttcc-tgcagctttaatgccacaagttta-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205448|gb|BU964701.1|BU964701
EST:     CACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAAT                         AATTTGGATTCGAAGATTCATCACAATAACCTTCTCAATAACATACTTGCA
genomic: CACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAATgtaagtttct ... tctttaccagAATTTGGATTCGAAGATTCATCACAATAACCTTCTCAATAACATACTTGCA
EST: gi|17021927|gb|BM092961.1|BM092961
EST:     CACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAAT                         AATTTGGATTCGAAGATTCATCACAATAACCTTCTCAATAACATACTTGCA
genomic: CACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAATgtaagtttct ... tctttaccagAATTTGGATTCGAAGATTCATCACAATAACCTTCTCAATAACATACTTGCA
EST: gi|6724770|gb|AW309169.1|AW309169
EST:     CACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAAT                         AATTTGGATTCGAAGATTCATCACAATAACCTTCTCAATAACATACTTGCA
genomic: CACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAATgtaagtttct ... tctttaccagAATTTGGATTCGAAGATTCATCACAATAACCTTCTCAATAACATACTTGCA