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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAGgtattcttgatcttttatggttgacggggattcaaaatcatttatactaactcctctatgttcccattttgctttgttcttaaaatgattaaagcatgct...

Basic information

species Glycine max
transcript GLYMA03G34650.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34650.1 (Glycine max), 5'ss of exon 13
lower sequence: AT3G53090.1 (Arabidopsis thaliana), 5'ss of exon 12
ACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAGgt--attcttgatctttta-tggttgacggggattcaaaatcatttatactaactcctctatgttcccattttgctttgt--tcttaaaatgattaaagcatgct
||| |  || || ||  |||| || |||||||| || ||||||||||| || ||| | ||||| |||||||||||||||||| | || | |||||| || ||   || |||| |||    |     | |    ||  | ||  | | |  ||| |    | | || |  || |||||| |  ||||     |             
ACCGAGTGAACGTTGCTTGCTCCTCAAATTTGTGACTAGTTGTTCTCGGGCACCACTCCTTGGTTTCAAATACTTGCAGCCAACCTTCATCATCCATAAAgtttgtttttgaacttaagcttagaaatgtatgtttgatattctgtttggtaattttgttttcttacttttgtgctttttcatcttctgcag-------------

upper sequence: GLYMA03G34650.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv08s0007g04290.t01 (Vitis vinifera), 5'ss of exon 12
ACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAGgtattcttgatcttttatggttgacggggattcaaaatcatttatactaactcctctatgttcccattttgct-ttgttcttaaaatgattaaagcatgct------
||| ||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||| || ||| || |||||||| ||||||| || || ||||||| |||    | ||||  |  ||    |||     ||||| ||  || ||  | || |  |  ||  |  | || ||| ||  |||| ||  | |||        
ACCAAAAGAACGCTGTATGCTTCTTAAATTTGTGACAAGTTGTTCTCGAGCTCCATTACTTGGATTTAAACACCTGCAGCCAACTTTTACTATTCATAAGgtatgctttggatcttata-tccacataaatt-----tcattcattatatctt-tttaagcacttatcatcttattattcatatcatgaatatggtatgtggtttgt

upper sequence: GLYMA03G34650.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ30786 (Selaginella moellendorffii), 5'ss of exon 11
ACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAGgtattcttgatcttttatggttgacggggattcaaaatcatttatactaactcctctatgttcccattttgctttgttcttaaaatgattaaagcatgct
    |||||  | ||     | || |||||||| || || || |||||||| || || || || |||||| |||||||||| || ||||| ||||||||||| ||    |||||      |  ||||   ||  |  || ||     |      |||  |                                        
TGTCAAAGAAAGATGCGCTGTGCTCAAATTTGTAACGAGCTGCTCTCGTGCACCTTTGCTGGGATTCAAACACTTGCAGCCTCCGTTTACAATCCACAAGgt-ttggcaatcttaagca-tcaacgg---ttttagctcgttcccgtttttctttcttag----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51344285|gb|CO985018.1|CO985018
EST:     CTCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAG                         GTTGCATGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGAT
genomic: CTCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAGgtattcttga ... gtttacacagGTTGCATGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGAT