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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAAACAGAAGGTTTCTGCTATTGAAAGCATGCTTAGAGGCTTGGATTTGTCTGATAAGCATAATTCATCTTCTCTCCGGTCAACAAGTTTGGATCTAGgtacaacataagttttcctgttatatatttttatttttacctcaattttcaggacttgatgccattcaatggttgatctgttagtgttttttcaaactatttgagcggctaaatttttctcttattgcccctagtgcag

Basic information

species Glycine max
transcript GLYMA03G32710.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32710.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 10
---AGCAAACAGAAGGTTTCTGCTATTGAAAGCATGCTTAGAGGCTTGGATTTGTCTGATAAGCATAATTCATCTTCTCTCCGGTCAACAAGTTTGGATCTAGgtacaacataagttttcctgttatatatttttattt----------ttacctcaattttcaggacttgatgccattcaatggttga--------------tctgttag--------------------tgttttt-----tcaaactattt--gagcggctaaatttttctcttattgcccctagtgcag
   ||||| ||||| ||| |||| |||||||||||||||||||| ||||| || ||||| ||||||||||||     |||||| ||| | ||||||||||||||||    ||   |||  |  ||| ||  || | |||          |||  |  | | |||     ||| || ||||||||||| |              |||| | |                    ||| |||     |  ||| ||||  || ||||||| ||||||||||||||||||||| ||||
GCAAGCAAGCAGAAAGTTACTGCCATTGAAAGCATGCTTAGAGGTTTGGAATTATCTGACAAGCATAATTCAAG---TCTCCGATCATCTAGTTTGGATCTAGgtattgaatggttttgtcaattagattattatctttgatcataatattaatttgactgtcaatctatgaagctattcaatggtttactgttgaatcactatctgattgaccaatggtcaaaacgaagctgtctttaatgtttgaacaatttatgaacggctaagtttttctcttattgcccctagcgcag

upper sequence: GLYMA03G32710.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 10
---AGCAAACAGAAGGTTTCTGCTATTGAAAGCATGCTTAGAGGCTTGGATTTGTCTGATAAGCATAATTCATCTTCTCTCCGGTCAACAAGTTTGGATCTAGgtacaacataagttttcctgttatatatttttattt----------ttacctcaattttcaggacttgatgccattcaatggttga--------------tctgttag--------------------tgttttt-----tcaaactattt--gagcggctaaatttttctcttattgcccctagtgcag
   ||||| ||||| ||| |||| |||||||||||||||||||| ||||| || ||||| ||||||||||||     |||||| ||| | ||||||||||||||||    ||   |||  |  ||| ||  || | |||          |||  |  | | |||     ||| || ||||||||||| |              |||| | |                    ||| |||     |  ||| ||||  || ||||||| ||||||||||||||||||||| ||||
GCAAGCAAGCAGAAAGTTACTGCCATTGAAAGCATGCTTAGAGGTTTGGAATTATCTGACAAGCATAATTCAAG---TCTCCGATCATCTAGTTTGGATCTAGgtattgaatggttttgtcaattagattattatctttgatcataatattaatttgactgtcaatctatgaagctattcaatggtttactgttgaatcactatctgattgaccaatggtcaaaacgaagctgtctttaatgtttgaacaatttatgaacggctaagtttttctcttattgcccctagcgcag