Sequence
atgc intronic sequence ATGC exonic sequenceAGGAATCAAATCAGCTGATACAGCAACAGATATCAAGAAGGCATACCACAAGGCAGCTCTCAGACATCATCCAGACAAGgtttgaatcttttgtgcctgcattacagttatctaactataagcttttggttgtaaagatgagctgccctcatttttagctttcaaaacttttgtacttagggaactttattttatctgtttttggtttgaatctag
Basic information
species | Glycine max |
transcript | GLYMA03G28930.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G28930.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os01g16680.1 (Oryza sativa), 5'ss of exon 5
AGGAATCAAATCAGCTGATACAGCAACAGATATCAAGAAGGCATACCACAAGGCAGCTCTCAGACATCATCCAGACAAGgt----ttgaatcttttgtgcctgcattacagttatc-taactataagcttttggttgtaaagatgagctgccctcatttttagctttcaaaacttttgtacttagggaactttattttatctgtttttggtttgaatctag
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AGGAATCGAACCATCTTGCACTTTCTTGGATATAAAGAAGGCATACCGCAAAGCAGCACTAAGGCATCATCCAGACAAAgtaatactgaataccattttcatctagtatggctttccttactttcttctctt--ctctaatattaatatggcacag-----------------------------------------------------------------
upper sequence: GLYMA03G28930.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv00s0252g00060.t01 (Vitis vinifera), 5'ss of exon 9
AGGAATCAAATCAGCTGATACAGCAACAGATATCAAGAAGGCATACCACAAGGCAGCTCTCAGACATCATCCAGACAAGgtttgaatcttttgtgcctgcattacagttatctaactataagcttttggttgtaaagatgagctgccctcatttttagctttcaaaacttttgtacttagggaactttattttatctgtttttggtttgaatctag
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GGGAATTAAACCATCTGAGACAGCAGCTGATATCAAGAAGGCATACCGGAAAGCTGCACTTAGACATCATCCAGACAAGgtttaa--tctttgcttatatgctatttgagtctattttcaatctgacctccatattttctactcattttcattaatatttctcttgagttag--------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6567383|gb|AW234994.1|AW234994EST: ATATCAAGAAGGCATACCACAAGGCAGCTCTCAGACATCATCCAGACAAG GCTGGGTCAGTTGT
genomic: ATATCAAGAAGGCATACCACAAGGCAGCTCTCAGACATCATCCAGACAAGgtttgaatct ... ttgaatctagGCTGG-TCAGTTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAATCAAATCAGCTGATACAGCAACAGATATCAAGAAGGCATACCACAAGGCAGCTCTCAGACATCATCCAGACAAGgtttgaatcttttgtgcctgcattacagttatctaactataagcttttggttgtaaagatgagctgccctcatttttagctttcaaaacttttgtacttagggaactttattttatctgtttttggtttgaatctag
- - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC