Sequence
atgc intronic sequence ATGC exonic sequenceTCAGAGAGAGACCTTACTCCTCTTCATCAAGCTGCAAAGTTGCTCATTAATTCCCAGTTGGAAGAAGGTGATTGGCCCCAACAGgtgcatatcaacctttgatattgataatagatcttatttaataaacttatttagtgataaattaaataggatcttaaaatataagacaccaaacgtgaag...
Basic information
species | Glycine max |
transcript | GLYMA03G27620.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G27620.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv09s0054g01230.t01 (Vitis vinifera), 5'ss of exon 17
TCAGAGAGAGACCTTACTCCTCTTCATCAAGCTGCAAAGTTGCTCATTAATTCCCAGTTGGAAGAAGGTGATTGGCCCCAACAGgtg---catatcaacctttgatattgataatagatcttatttaataaacttatttagtgataaattaaataggatcttaaaatataagacaccaaacgtgaag---------------------------------------
| |||||||||| || |||||||| |||||||||||| | ||||||||||| ||||||| ||||||| ||||||||||| || | ||| | || | || || | | | ||| | ||| | || | |||| | | || ||| | | |
GCTGAGAGAGACCCAACACCTCTTCACAGGGCTGCAAAGTTGTTGATTAATTCCCAAATGGAAGATGGTGATTTTCCCCAACAGgtagcacacttgaacatgaattaaaaacaaaaggaataacattttaacatggttttgggaaatggaaaatgatgttctttcgtagctgactatatatactgggtggtagtctaaccatttgatcatcaattatctatggcag
upper sequence: GLYMA03G27620.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv09s0054g01330.t01 (Vitis vinifera), 5'ss of exon 2
TCAGAGAGAGACCTTACTCCTCTTCATCAAGCTGCAAAGTTGCTCATTAATTCCCAGTTGGAAGAAGGTGATTGGCCCCAACAGgtg---catatcaacctttgatattgataatagatcttatttaataaacttatttagtgataaatt-aaataggatcttaaaatataagacaccaaacgtgaag----------------------------------------
| |||||||||| || ||||||||| ||||||||| || | ||||||||||| ||||||| ||||||| ||||||||||| || | ||| | | | || || | | ||| | ||| || |||| |||| | | || || | | | |
GCTGAGAGAGACCCAACACCTCTTCATAGGGCTGCAAAGCTGTTGATTAATTCCCAAATGGAAGATGGTGATTTTCCCCAACAGgtagctcacttgaacatgaataaaaaacaaaaggagcaacattttaacatggttt--tggcaaatggaaatgatgttcttttgtacctaactatatatactaggtggtagtctaaccatttaatcatcaaattatctatggcag
upper sequence: GLYMA03G27620.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv09s0054g01410.t01 (Vitis vinifera), 5'ss of exon 17
TCAGAGAGAGACCTTACTCCTCTTCATCAAGCTGCAAAGTTGCTCATTAATTCCCAGTTGGAAGAAGGTGATTGGCCCCAACAGgt-gcata-tcaacctttgatattgataatagatcttatttaataaacttatttagtgataaattaaataggatcttaaaatataagacaccaaacgtgaag-----
|||||||||||| || |||||||| | ||||||||| || | ||||||||||| ||||||| ||||||| ||||||||||| || | | || | | || || ||| || ||| || | || ||| | | | | | ||| | | || ||| | |
GCAGAGAGAGACCCAACACCTCTTCACAAGGCTGCAAAGCTGTTGATTAATTCCCAAATGGAAGATGGTGATTTTCCCCAACAGgtagctcacttggttttgggaaatggaaaatgatgttcttttgtag--ctgactat--atatactgggtggtagtctaaccatttaatcatcaattatctatggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15337778|gb|BI498434.1|BI498434EST: CAAAGTTGCTCATTAATTCCCAGTTGGAAGAAGGTGATTGGCCCCAACAG GAAATCACTGGAGTATTCTTGAAAAACTGCATGATGCATTACCCAATGTAT
genomic: CAAAGTTGCTCATTAATTCCCAGTTGGAAGAAGGTGATTGGCCCCAACAGgtgcatatca ... gatctggtagGAAATCACTGGAGTATTCTTGAAAAACTGCATGATGCATTACCCAATGTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAGAGAGAGACCTTACTCCTCTTCATCAAGCTGCAAAGTTGCTCATTAATTCCCAGTTGGAAGAAGGTGATTGGCCCCAACAGgtgcatatcaacctttgatattgataatagatcttatttaataaacttatttagtgataaattaaataggatcttaaaatataagacaccaaacgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaaa