Sequence
atgc intronic sequence ATGC exonic sequenceTTATTTTGATAAAAATGGCCAGAATTGGGGTTTCCCTACATATAATTGGGAAGAAATGTCAAAGGACAACTATGGTTGGTGGAGAGCTCGATTAACACAGgttttggttttgaattcttgatcttgtccttatatggacaataatccatccaaagttaaatatataggctgaattctttttttttttgtattttttttaaatccacaacag
Basic information
species | Glycine max |
transcript | GLYMA03G27600.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G27600.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os07g46790.1 (Oryza sativa), 5'ss of exon 13
TTATTTTGATAAAAATGGCCAGAATTGGGGTTTCCCTACATATAATTGGGAAGAAATGTCAAAGGACAACTATGGTTGGTGGAGAGCTCGATTAACACAGgtt--ttggttttgaattcttgatcttgtccttatatggacaataatccatccaaagttaaatatataggctgaattctttttttttttgtattttttttaaatccacaacag
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TTATTTCGACAAAAATGGACAAAATTGGGGTTTTCCTACATATAACTGGGAGGAAATGTCAAAGGATAATTATGGGTGGTGGCGAGCTCGTCTGACACAGgttatttaatagcaaatattttttcctgtc------tggctggtcatct-tttatcgtcat-tatttatcgccagttaccttgttccag------------------------
upper sequence: GLYMA03G27600.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G136803_T02 (Zea mays), 5'ss of exon 3
TTATTTTGATAAAAATGGCCAGAATTGGGGTTTCCCTACATATAATTGGGAAGAAATGTCAAAGGACAACTATGGTTGGTGGAGAGCTCGATTAACACAGgttttggttttgaattcttgatcttgtccttatatggacaataatccatccaaagttaaatatataggctgaattctttttttttttgtattttttttaaatccacaacag
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TTATTTTGACAAGAATGGACAAAATTGGGGTTTTCCTACATATAACTGGGAGGAGATGTCAAAGGATAATTATGGGTGGTGGCGAGCTCGTCTGACACAGgttat----ttaacataacagtcgtatttctgactggtcatcttttccttttattattcatatcctactagcatgttgcag------------------------------
upper sequence: GLYMA03G27600.1 (Glycine max), 5'ss of exon 13
lower sequence: AT2G40840.1 (Arabidopsis thaliana), 5'ss of exon 13
TTATTTTGATAAAAATGGCCAGAATTGGGGTTTCCCTACATATAATTGGGAAGAAATGTCAAAGGACAACTATGGTTGGTGGAGAGCTCGATTAACACAGgttttggttttgaattcttgatcttgtccttatatggacaataatccatccaaagttaaatatataggctgaattctttttttttttgtattttttttaaatccacaacag
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CTATTTTGACAAAAATGGTCAGAACTGGGGATTTCCTACTTATAACTGGGAGGAAATGTCAAAAGACAACTATGCCTGGTGGCGTGCTCGCCTAACACAGgttg-------gaattattgtccttacc--------agccacatcctttgtagatctgaaggc-tgaccacattgcatacttgctttgcag--------------------
upper sequence: GLYMA03G27600.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv08s0040g00670.t01 (Vitis vinifera), 5'ss of exon 12
TTATTTTGATAAAAATGGCCAGAATTGGGGTTTCCCTACATATAATTGGGAAGAAATGTCAAAGGACAACTATGGTTGGTGGAGAGCTCGATTAACACAGgttttggttttgaattcttgatcttgtccttatatggacaata-atccatcc--aaagttaaatatataggctgaattctttttttttttgtatt---ttttttaaatccacaacag
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TTATTTTGATAAGAATGGACAAAATTGGGGATTCCCCACATATAATTGGGAGGAAATGTCCAAAGACAACTATGCTTGGTGGCGTGCCCGTTTATCACAGgtttcacacttactgtctaaatttttatcctctttgtctactccatctgttcttacattgtattctatgctctggactatctcttttctgaagttaagttttcttttttgttctcag
upper sequence: GLYMA03G27600.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S253_27V6.1 (Physcomitrella patens), 5'ss of exon 9
TTATTTTGATAAAAATGGCCAGAATTGGGGTTTCCCTACATATAATTGGGAAGAAATGTCAAAGGACAACTATGGTTGGTGGAGAGCTCGATTAACACAGgttttg-----gttttgaat-tcttgatcttgtccttatatggacaataatccatccaaagttaaatatataggctgaattctttttttttttgtattttttttaaatccacaacag
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TTATTTTGACATGAACGGGCAGAATTGGGGATTTCCGACCTACGTCTGGGAGGAAATGGCCAAGGACAACTACGGCTGGTGGAGAGCTCGACTTTCTCAGgtcagaacggagcttagaatgcctttgcagtgtgttttgttgtattg-aatctgttcgtgtaaaaggacattgttaagctacaacttatggtcattcttgt----------------
upper sequence: GLYMA03G27600.1 (Glycine max), 5'ss of exon 13
lower sequence: EFJ19739 (Selaginella moellendorffii), 5'ss of exon 12
TTATTTTGATAAAAATGGCCAGAATTGGGGTTTCCCTACATATAATTGGGAAGAAATGTCAAAGGACAACTATGGTTGGTGGAGAGCTCGATTAACACAGgttttggttttgaattcttgatcttgtccttatatggacaataatccatccaaagttaaatatataggctgaattctttttttttttgtattttttttaaatccacaacag
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CTATTTCGATAAGAACGGGCAAAACTGGGGATTTCCTACTTACAACTGGGAAGAAATGTCCAAAGATAACTTTGCATGGTGGAGAGCTCGTTTAACTCAGgttt-gaacggacacatttgagattctcc--acacaactcatttttcttgcag----------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193638364|gb|FK585416.1|FK585416EST: AAGAAATGTCAAAGGACAACTATGGTTGGTGGAGAGCTCGATTGACACAG ATGGCAAAATATTTTACAGCTTACAGGATTGATCACATATTGGGATTCTTC
genomic: AAGAAATGTCAAAGGACAACTATGGTTGGTGGAGAGCTCGATTAACACAGgttttggttt ... tccacaacagATGGCAAAATATTTTACAGCTTACAGGATTGATCACATATTGGGATTCTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATTTTGATAAAAATGGCCAGAATTGGGGTTTCCCTACATATAATTGGGAAGAAATGTCAAAGGACAACTATGGTTGGTGGAGAGCTCGATTAACACAGgttttggttttgaattcttgatcttgtccttatatggacaataatccatccaaagttaaatatataggctgaattctttttttttttgtattttttttaaatccacaacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT