Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACACATGCCTACACCGGAGCAATGGACTAATGTATTCAATCCAGCATTTTCATACTATGTCTATTACTGTTATGCAAATCTTTATACCTTAAACAAGgtatgtaacttttctcctgaatatgtatcaatttttggctgcttatctattcactctttcaagacgaaaacacgcttctttttactggttatggaaagaa...

Basic information

species Glycine max
transcript GLYMA03G07460.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G07460.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os05g28180.3 (Oryza sativa), 5'ss of exon 5
AAAACACATGCCTACACCGGAGCAATGGACTAATGTATTCAATCCAGCATTTTCATACTATGTCTATTACTGTTATGCAAATCTTTATACCTTAAACAAGgtatgtaacttttctcctgaatatgtatcaatttttggctgcttatctattcactctttcaagacgaaaacacgcttctttttactggttatggaaagaa
||| || ||||||||||| || |||||||| ||||| ||||| |||||||||||||| ||||  |||||||| ||||| ||  | || ||  | || |||||| | || ||  |  |   |||  | | ||||||               ||| | |      |    |||||   | |      | |            
AAAGCATATGCCTACACCTGAACAATGGACCAATGTCTTCAACCCAGCATTTTCATATTATGCATATTACTGCTATGCTAACTTATACACACTCAATAAGgtaggaaaattgccctc---atacctct-aattttc-------------ctcattttgctggaaaagtaacacttctgtgcaatttag------------

upper sequence: GLYMA03G07460.1 (Glycine max), 5'ss of exon 13
lower sequence: AT2G38280.1 (Arabidopsis thaliana), 5'ss of exon 13
AAAACACATGCCTACACCGGAGCAATGGACTAATGTATTCAATCCAGCATTTTCATACTATGTCTATTACTGTTATGCAAATCTTTATACCTTAAACAAGgtatgtaacttttctcctgaatatgtatcaatttttggctgcttatctattcactctttcaagacgaaaacacgcttctttttactggttatggaaagaa
|||||||||||| || || |  ||||||||||| | ||||||||| |||||||| || |||||||| || |||||||| || || |||   ||||| ||||||     |  |||  || | |  |  ||  |   |  ||   | |      |    |  || | | |   ||  || || || | |             
AAAACACATGCCCACTCCAGCTCAATGGACTAACGCATTCAATCCTGCATTTTCGTATTATGTCTACTATTGTTATGCTAACCTCTATGTGTTAAATAAGgta-----ccattcctcttagt-cgcttctgtaactaacttggtgttctcaaaactgtgtaatatggagtaactatttttctt-cag-------------

upper sequence: GLYMA03G07460.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 13
AAAACACATGCCTACACCGGAGCAATGGACTAATGTATTCAATCCAGCATTTTCATACTATGTCTATTACTGTTATGCAAATCTTTATACCTTAAACAAGgtatgtaacttttctcctgaatatgtatcaatttttggctgcttatctattcactctttcaagacgaaaacacgcttctttttactggttatggaaagaa---
|||||| |||||||| || |  || ||||| ||||  |||||||| |||||||||||||||||||| ||||||||||| || || ||||| || ||||||||  ||  | |       ||| || |       |     |  ||  | ||  |   |  | ||          | ||  ||| |     |||||   ||    
AAAACATATGCCTACTCCAGCTCAGTGGACCAATGCTTTCAATCCTGCATTTTCATACTATGTCTACTACTGTTATGCTAACCTCTATACATTGAACAAGgttcgtg-catgcacttagaaaatatcctcccctacttttattttgccatatatgatcaccagtaatgcttttggtttgtttcaaca--tatggtttgatagt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9565697|gb|BE475206.1|BE475206
EST:     TTTCATACTATGTCTATTACTGTTATGCAAATCTTTATACCTTAAACAAG                         CTTCGAGAATCAAAGGGAATGACGACAATCAAATTCCGTCCACATTCTGGA
genomic: TTTCATACTATGTCTATTACTGTTATGCAAATCTTTATACCTTAAACAAGgtatgtaact ... tatttttcagCTTCGAGAATCAAAGGGAATGACGACAATCAAATTCCGTCCACATTCTGGA