Sequence
atgc intronic sequence ATGC exonic sequenceATTGGGGAAGAGCTTGGAGATGTCTATGACTATGTAGCTCCCTGCTTTCCTCCAAGgttttctctatattgaatatactacctttttaatcttcacagcttttggactggcttctctatgaaacacatcctaaacccatgcttgagcctatccgagtcaaactacacatttcacttaatctaaacaagtgtttattggtagagggcttctttatgtacatgttttatttgttctaattctggcag
Basic information
species | Glycine max |
transcript | GLYMA03G03120.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 13
lower sequence: AT1G71820.2 (Arabidopsis thaliana), 5'ss of exon 13
ATTGGGGAAGAGCTTGGAGATGTCTATGACTATGTAGCTCCCTGCTTTCCTCCAAGgttttctctatattgaatatactacctttttaatcttcacagcttttggactggcttctctatgaaacacatcctaaacccatgcttgagcctatccgagtcaaactacacatttcacttaatctaaacaagtgtttattggtagagggcttctttatgtacatgttttatttgttctaattctggcag
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ATTGGAGAGGAACTTGGAGATATTTATGACTATGTGGCTCCTTGTTTTCCTCCAAGgtttgttcc--------tatctcgttttcctcaagtggacaat-----gaaagattacagcttaaaatttattctgttccc-----caagtgaaaaagggttccttagca-atcttctttgctggcag-------------------------------------------------------------
upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 12
ATTGGGGAAGAGCTTGGAGATGTCTATGACTATGTAGCTCCCTGCTTTCCTCCAAGgttttctctatattgaa-tatactacctttttaatcttcacagcttttggactggcttctctatgaaacacatcctaaacccatgcttgagcctatcc-gagtcaaactacacatttcacttaatctaaacaagtgtttattggtagagggcttctttatgtacatgttttatttgttctaattctggcag
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ATTGGAGAAGAGCTTGGAGATATTTATGACTATGTGGCTCCTTGTTTTCCCCCAAGgtttggtccttaccgaaatatgctttgttctgacttcttctggttttacaccta---tcttta-gccacgtatccaattttctttatgatttctgttctgaggt---------------------------------------------------------------------------------------
upper sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 5'ss of exon 12
ATTGGGGAAGAGCTTGGAGATGTCTATGACTATGTAGCTCCCTGCTTTCCTCCAAGgttttctctatattgaa-tatactacctttttaatcttcacagcttttggactggcttctctatgaaacacatcctaaacccatgcttgagcctatcc-gagtcaaactacacatttcacttaatctaaacaagtgtttattggtagagggcttctttatgtacatgttttatttgttctaattctggcag
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ATTGGAGAAGAGCTTGGAGATATTTATGACTATGTGGCTCCTTGTTTTCCCCCAAGgtttggtccttactgaaatatgcttttgttctgacttcttctggtttta---tgcctatcattagccatgtatccaattttctttatgatttgtgttctgagg----------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15664484|gb|BI701855.1|BI701855EST: GAAGAGCTTGGAGATGTCTATGACTATGTAGCTCCCTGCTTTCCTCCAAG ATACGAGATATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCA
genomic: GAAGAGCTTGGAGATGTCTATGACTATGTAGCTCCCTGCTTTCCTCCAAGgttttctcta ... attctggcagATACGAGATATTCCAGCTAATGGTAAATCTGTACACTGAGAGGTTTATTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGGGGAAGAGCTTGGAGATGTCTATGACTATGTAGCTCCCTGCTTTCCTCCAAGgttttctctatattgaatatactacctttttaatcttcacagcttttggactggcttctctatgaaacacatcctaaacccatgcttgagcctatccgagtcaaactacacatttcacttaatctaaacaagtgtttattggtagagggcttctttatgtacatgttttatttgttctaattctggcag
- - - - AGAGCT
- - - - GAGCTT
- - - - - - TTGGAG
- - - - - - - TGGAGA
- - - - - - - GGAGAT
- - - - - - - - GAGATG