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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAATTTGGAGAATCCCAGTCTTTATCACTACGCACTGTTCTCAGATAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCTAAGgtgacttgggctgtctttttaaccataccagtatttgtgtgcaagttcattgtttccttttatagattgcaaataagggtgccttgaccatggtcaacatatcgtgcatgtgaaagtgtatctatgatttagtaaattatattattaaaaccaggcctcataacttagtttctgtcttcaatgttgcag

Basic information

species Glycine max
transcript GLYMA03G02250.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G02250.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os09g36190.1 (Oryza sativa), 5'ss of exon 7
TGAGAATTTGGAGAATCCCAGTCTTTATCACTACGCACTGTTCTCAGATAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCTAAGgtgacttggg-ctgtctttttaaccataccagtatttgtgtgcaagttcattgtttccttttatagattgcaaataagggtgccttgaccatggtcaacatatcgtgcatgtgaaagtgtatctatgatttagtaaattatattattaaaaccaggcctcataacttagtttctgtcttcaatgttgcag
 ||||| ||||| |||||    || || ||||| ||||| |||||||| ||||||||||| |||||||||||||| |||||||| || ||||||||||||||   ||  | ||  || ||||| || |     | |    |    | | | ||||            |  ||| || |  || | | ||| |  |||                                                                                             
CGAGAACTTGGAAAATCCAGAGCTCTACCACTATGCACTTTTCTCAGACAATGTCTTGGCAGCATCTGTTGTTGTGAACTCAACCATAATGAATGCTAAGgtagtttctgtcttcctctttaatcaaatgcaaactgtgataagtgataagtgttc-----------tgacaactatgtatggcataaccttt-tcag--------------------------------------------------------------------------------------------

upper sequence: GLYMA03G02250.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os09g36180.1 (Oryza sativa), 5'ss of exon 8
---TGAGAATTTGGAGAATCCCAGTCTTTATCACTACGCACTGTTCTCAGATAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCTAAGgtgacttgggctgtctttttaaccataccagtatttgtgtgcaagttcattgtttccttttatagattgcaaataagggtgccttgaccatggtcaacatatcgtgcatgtgaaagtgtatctatgatttagtaaattatattattaaaaccaggcctcataacttagtttctgtcttcaatgttgcag
    ||||| ||||| |||||    || || || || ||||| |||||||| ||||||||||| |||||||||||    |||||||| || ||||||||||||||   || | ||  |||||||| ||    |||          ||||    |  ||  | | | ||  |    ||        |||  |                                                                                                     
GAGCGAGAACTTGGAAAATCCAGAGCTCTACCATTATGCACTTTTCTCAGACAATGTCTTGGCAGCATCTGTTGTG---AACTCAACCATCATGAATGCTAAGgtagtttcgtcttcctttttaatca----agtgca-------aagtgtgataattgttctaacag-ctatctatggcataatcttttcag---------------------------------------------------------------------------------------------------

upper sequence: GLYMA03G02250.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G379577_T01 (Zea mays), 5'ss of exon 7
TGAGAATTTGGAGAATCCCAGTCTTTATCACTACGCACTGTTCTCAGATAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCTAAGgtgacttgggctgtctttttaaccataccagtatttgtgtgcaagttcattgtttccttttatagattgcaaataagggtgccttgaccatggtcaacatatcgtgcatgtgaaagtgtatctatgatttagtaaattatattattaaaaccaggcctcataacttagtttctgtcttcaatgttgcag
||| ||||| || ||||| | ||| |||||||| ||||| |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||||||   ||    ||   |||||  ||    | ||||    ||||          |   |  || | ||||    |  |  || | |   ||                                                                                                   
TGAAAATTTAGAAAATCCAAATCTCTATCACTATGCACTTTTCTCAGATAATGTCTTGGCAGCTTCTGTTGTTGTGAACTCAACCATCATGAATGCTAAGgtattttcca-tgcacttttagtca----attattcaattgcattcctcaaagtagttccta-acattgatgtttggaatgtccttttcag--------------------------------------------------------------------------------------------------

upper sequence: GLYMA03G02250.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G386971_T01 (Zea mays), 5'ss of exon 7
TGAGAATTTGGAGAATCCCAGTCTTTATCACTACGCACTGTTCTCAGATAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCTAAGgtgacttgggctgtctttttaaccataccagtatttgtgtgcaagttcattgtttccttttatagattgcaaataagggtgccttgaccatggtcaacatatcgtgcatgtgaaagtgtatctatgatttagtaaattatattattaaaaccaggcctcataacttagtttctgtcttcaatgttgcag
||| ||||| || || || | ||| |||||||| ||||| ||||| |||||||| ||||| || ||||||||||| |||||||| || ||||||||||||||   ||| | |||  |||||  ||    | ||||    ||||  | || |   |  |||   |   ||    |  |  || |||   ||                                                                                                   
TGAAAATTTAGAAAACCCAAATCTCTATCACTATGCACTTTTCTCTGATAATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAGgtattttgcg-tgtacttttagtca----attattcaattgcac-tccactaagtagtttctaatggtgatgtttggcatgtctttttcag--------------------------------------------------------------------------------------------------

upper sequence: GLYMA03G02250.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G076276_T03 (Zea mays), 5'ss of exon 7
TGAGAATTTGGAGAATCCCAGTCTTTATCACTACGCACTGTTCTCAGATAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCTAAGgtgacttgggctgtctttttaaccataccagtatttgtgtgcaagttcattgtttccttttatagattgcaaataagggtgccttgaccatggtcaacatatcgtgcatgtgaaagtgtatctatgatttagtaaattatattattaaaaccaggcctcataacttagtttctgtcttcaatgttgcag
 ||||| ||||| |||||   |||||| || || || || |||||||||||||| ||||| ||||| ||||| ||||||||||| || |||||||| ||||| | |        | | || |    ||  | |     ||| ||  ||     ||| || | |    | | | | |        |||||     ||  |||| |  | | |||   | | ||||| | ||   |                                                       
CGAGAACTTGGAAAATCCTGATCTTTACCATTATGCTCTTTTCTCAGATAATGTTTTGGCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCGAAGgttagtgtaatccccatcttgaa---actggaa-----gtgtaatctc-----ttcattatgt---ctaccattgaa-------tgacc-----cattatatagcacttttgattttctttctataaattttcag------------------------------------------------------

upper sequence: GLYMA03G02250.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G147145_T02 (Zea mays), 5'ss of exon 4
TGAGAATTTGGAGAATCCCAGTCTTTATCACTACGCACTGTTCTCAGATAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCTAAGgtgacttgggctgtctttttaaccataccagtatttgtgtgcaagttcattgtttccttttatagattgcaaataagggtgccttgaccatggtcaacatatcgtgcatgtgaaagtgtatctatgatttagtaaattatattattaaaaccaggcctcataacttagtttctgtcttcaatgttgcag
||||||  |||| |||||   |||||| || || || || ||||| || ||||| ||||| ||||| ||||| ||||||||||| || |||||||||||||| | ||    ||  | || || | |   | |||           ||||||||||       |   | |  ||| |   | |  |   | |  |   | |    |  || || |                                                                           
TGAGAACCTGGAAAATCCTGATCTTTACCATTATGCTCTTTTCTCGGACAATGTTTTGGCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCTAAGgttagtttaa-tgcatcttcaagc-tggaaatatgatctc-----ttcattgtttgtaccattgactggtcaattatattacact---cttatttttcttgctataaatttgcag--------------------------------------------------------------------------

upper sequence: GLYMA03G02250.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G565856_T01 (Zea mays), 5'ss of exon 9
TGAGAATTTGGAGAATCCCAGTCTTTATCACTACGCACTGTTCTCAGATAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCTAAGgtgacttgggctgtctttttaaccataccagtatttgtgtgcaagttcattgtttccttttatagattgcaaataagggtgc---cttgaccatggtcaacatatcgtgcatgtgaaagtgtatctatgatttagtaaattatattattaaaaccaggcctcataacttagtttctgtcttcaatgttgcag
 ||||| ||||| ||||    |||||| || || || || |||||||| ||||| ||| | ||||| ||||| ||||||||||| || |||||||| ||||| | |        | | || |   |   ||| |        |  |||||| | ||         || ||  || |    ||    ||||   |  |    |||                                                                                        
CGAGAACTTGGAAAATCTTGATCTTTACCATTATGCTCTTTTCTCAGACAATGTTTTGTCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCAAAGgttagtgtaatccccatcttgaaactggaagtgta-----atatcttcattatgtctaccatggaatggcccattatatagcacttttgatttttttttctataa---------------------------------------------------------------------------------------

upper sequence: GLYMA03G02250.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv15s0048g01300.t01 (Vitis vinifera), 5'ss of exon 8
TGAGAATTTGGAGAATCCCAGTCTTTATCACTACGCACTGTTCTCAGATAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCTAAGgtgacttgggctgtctttttaacc-ataccagtatttgtgtgcaagttcattgtttccttttatagattgcaaataagggtgccttgaccatggtcaacatatcgtgcatgtgaaagtgtatctatgatttagtaaattatattattaaaaccaggcctcataacttagtttctgtcttcaatgttgcag
|||||||||||| ||||| | |||||| || || || || ||||| |||||||| |||||||| || ||||||||||||||||| ||  ||||||| |||||||  |||    | | ||||    |||| || || | |  |  |  |  || |       | || |   | | ||   ||  |       |  || ||||                                                                                         
TGAGAATTTGGAAAATCCAAATCTTTACCATTATGCTCTCTTCTCTGATAATGTATTGGCTGCTTCAGTTGTTGTCAACTCAACCATCTTGAATGCCAAGgtgaagtggtggatttatttactttatactagcatctttaagtgatcttcttatcctagact-taaaacaccagtattagtatcccctaatttatctacat-----------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18692679|gb|BM521527.1|BM521527
EST:     ATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCTAAG                         GATCCATCGAAGAATGTTTTTCACCTTGTTACTGATAAACTAAATTTTGGA
genomic: ATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCTAAGgtgacttggg ... aatgttgcagGATCCATCGAAGAATGTTTTTCACCTTGTTACTGATAAACTAAATTTTGGA
EST: gi|4313528|gb|AI460647.1|AI460647
EST:     ATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCTAAG                         GATCCATCGAAGAATGTTTTTCACCTTGTTACTGATAAACTAAATTTTGGA
genomic: ATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCTAAGgtgacttggg ... aatgttgcagGATCCATCGAAGAATGTTTTTCACCTTGTTACTGATAAACTAAATTTTGGA