1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGGgtgtgtatccactctcaatgttcaagtgttgtctttgttatggagggttggggagatactgctttgtttctgcagtcaagttttttgagtttctcttttt...
species | Glycine max |
transcript | GLYMA02G46350.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGG CTCCTTCAATGACAAGCCTGTAAATGATGCTGCCACTGGTCCACTTGGGAAEST: gi|192313377|gb|FK005149.1|FK005149
genomic: TCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGGgtgtgtatcc ... attttggcagCTCCTTCAATGACAAGCCTGTAAATGATGCTGCCACTGGTCCACTTGGGAA
EST: TCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGG CTCCTTCAATGACAAGCCTGTAAATGATGTTGCCACTGGTCCACTTGGGAAEST: gi|13481375|gb|BG510718.1|BG510718
genomic: TCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGGgtgtgtatcc ... attttggcagCTCCTTCAATGACAAGCCTGTAAATGATGCTGCCACTGGTCCACTTGGGAA
EST: TCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGG CTCCTTCAATGACAAGCCTGTAAATGATGCTGCCACTGGTCCACTTGGGAAEST: gi|192313376|gb|FK005148.1|FK005148
genomic: TCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGGgtgtgtatcc ... attttggcagCTCCTTCAATGACAAGCCTGTAAATGATGCTGCCACTGGTCCACTTGGGAA
EST: TCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGG CTCCTTCAATGACAAGCCTGTAAATGATGTTGCCACTGGTCCACTTGGGAA
genomic: TCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGGgtgtgtatcc ... attttggcagCTCCTTCAATGACAAGCCTGTAAATGATGCTGCCACTGGTCCACTTGGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGAGTGTATATTGGgtgtgtatccactctcaatgttcaagtgttgtctttgttatggagggttggggagatactgctttgtttctgcagtcaagttttttgagtttctcttttt
- - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG