Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATAAGGCTGTTCTCTCCAAGATCAAATGGAATTATCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAATTGTATACGACACTTTCAgtatgtaacatttctcttaatttatttttgtgcaattgtttatgatagagtttattttttatggtttgtttttttgctaatcttttag

Basic information

species Glycine max
transcript GLYMA02G45000.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os07g46590.1 (Oryza sativa), 5'ss of exon 2
GGATAAGGCTGTTCTCTCCAAGATCAAATGGAATTATCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAATTGTATACGACACTTTCAgtatgtaacatttctcttaatttatttttgtgcaattgtttatgatagagtttattttttatggtttgtttttttgctaatcttttag
||| || ||||  || ||||||||||||||||| ||||| ||||| ||||| |||||| |  |||| ||| |||| |||    |||||||||| ||||  ||||| |   | | || | |  ||    |  |     ||| |  |    |     |   | |  |||   |     |  |        
GGACAAAGCTGCCCTTTCCAAGATCAAATGGAACTATCTTATGGTCGATGAAGCTCATCGATTAAAGAATTGTGAAGCATCGCTGTATACGACTCTTTTGgtatgaacagtatttcctgaactaaaaataagagtgagttgactacctggaaagatgactctaatttcactgcccccacacag-----

upper sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G010342_T01 (Zea mays), 5'ss of exon 12
GGATAAGGCTGTTCTCTCCAAGATCAAATGGAATTATCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAATTGTATACGACACTTTCAgtatgtaacatttctcttaatttatttttgtgcaattgtttatgatagagtttattttttatggtttgtttttttgctaatcttttag
||| || || ||||| ||||||||||||||||| ||||| ||||| ||||| || ||  || | |||||| |||| |||  | | ||||| || ||||  ||||| |||| || | |   ||     |    ||| | ||    || | | ||| |   ||  |  || |||| |  |  |  |  ||
GGACAAAGCGGTTCTTTCCAAGATCAAATGGAACTATCTTATGGTTGATGAAGCCCACCGGTTGAAAAATTGTGAAGCATCACTATATACTACCCTTTTGgtatgaaacaattttttagcttctggatcacacaactttt----attgggattaatgacta--gactgattttgtattgcttctacag

upper sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 13
lower sequence: AT2G13370.1 (Arabidopsis thaliana), 5'ss of exon 14
GGATAAGGCTGTTCTCTCCAAGATCAAATGGAATTATCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAATTGTATACGACACTTTCAgtatgtaacatttctcttaatttatttttgtgcaattgtttatgatagagtttattttttatggtttgtttttttgctaatcttttag
|||||| ||||| ||||||||||| || |||| |||  | ||||||||||| || ||| | || |||||||||||||||||  | || ||  | ||||  |||||| || ||| |   || || | | | |     || || |  |   | || ||  | |||| | |  | | |  |  | ||||||
GGATAAAGCTGTCCTCTCCAAGATTAAGTGGATTTACTTAATGGTGGATGAAGCACATCGACTGAAAAATAGTGAGGCACAGCTCTACACAGCTCTTTTGgtatgtgacttttttaagaacttttatctattttcatggttctttttttggttgttcataatgggtggcatatcttatc-tgttttag

upper sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 13
GGATAAGGCTGTTCTCTCCAAGATCAAATGGAATTATCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAATTGTATACGACACTTTCAgtatgtaacatttctct-taatttattt---ttgtgcaattgtttatga-------tagagtttattttttatggtttgt---ttttttgctaatcttttag------------------------------------------------------------------------------------
||| |||||||| || || |||||||||||||| || || ||||| ||||| || || ||| |||| || ||||| |||||||||||||| || || || |||||    ||||||   | || | |||   |||  |  || |||||||       |||     | |  |   |||       |||  |  |||| || | |                                                                                    
GGACAAGGCTGTGCTTTCTAAGATCAAATGGAACTACCTCATGGTTGATGAAGCCCACAGGTTAAAGAACAGTGAAGCACAATTGTATACAACCCTCTCGgtatgctgtatttcttaatgatatgtttacgttggccttttatttatgaagcacaatagtaaacaatcctctgggtacacatatttcattataattttctggcttttgtcttttcaataaataatatttatttttgttgatgagtcttatttggttaatgctagatgatgccttgcttttctgcag