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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATATTCAAATGCTTATATGCTGGTGTATATACGTGAAGCTGACAAGGACAAAGTAATATGCAATGTGGATGAAAAAGACATTGCTGAACATTTAAGGgtaagtgactattcttacgtacatgtttgtcttctgcatttaaatttaatttgctaaataaatgcagatggctaatttattttaagataagcatgctctg...

Basic information

species Glycine max
transcript GLYMA02G43930.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os11g36470.1 (Oryza sativa), 5'ss of exon 9
CAAATATTCAAATGCTTATATGCTGGTGTATATACGTGAAGCTGACAAGGACAAAGTAATATGCAATGTGGATGAAAAAGACATTGCTGAACATTTAAGGgtaagtgactattcttacgtacatgtttgtcttctgcatttaaatttaatttgctaaataaatgcagatggcta--atttattttaagataagcatgctctg---
 || ||||||||||| || ||||| || || || |||||   ||| ||||||||| |||| || ||||| ||||| || ||||||||||| |||||||||||| |||  |  | || | | |    |  || |  |      |||||  |       |  | || | |   | |     | | | || | | |   || | |   
AAAGTATTCAAATGCCTACATGCTTGTCTACATCCGTGAGAGTGATAAGGACAAAATAATGTGTAATGTTGATGAGAAGGACATTGCTGAGCATTTAAGGgtatgtg--ttgttttgcattctcactcctccttgggcc---aatttcctcgataccacgattggaaaataccatcgcatgtgtcaacacacgtgggcccaggcc

upper sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 13
CAAATATTCAAATGCTTATATGCTGGTGTATATACGTGAAGCTGACAAGGACAAAGTAATATGCAATGTGGATGAAAAAGACATTGCTGAACATTTAAGGgtaagtgactattcttacgtacatgtttgtcttctgcatttaaatttaatttgctaaataaatgcagatggctaatttattttaagataagcatgctctg
 || ||||||||||| || ||||| || |||||||||||   ||||||||| ||| |||| || ||||| ||||| || || |||||||| |||||  ||||||||     ||||    ||| |  |   ||| |  || ||   | |  |||     |   || |||| | | ||| |||   |  |   | |   | |
AAAGTATTCAAATGCCTACATGCTTGTCTATATACGTGAGAATGACAAGGATAAAATAATGTGTAATGTCGATGAGAAGGATATTGCTGAGCATTTGCGGgtaagtag---ttctggtatactttgtccccttttctatgta---tcatcttgtgtttttgttggagatag-tgattgatt--gaactgttcttttacag

upper sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 13
CAAATATTCAAATGCTTATATGCTGGTGTATATACGTGAAGCTGACAAGGACAAAGTAATATGCAATGTGGATGAAAAAGACATTGCTGAACATTTAAGGgtaagtgactattcttacgtacatgtttgtcttctgcatttaaatttaatttgctaaataaatgcagatggctaatttattttaagataagcatgctctg
 || ||||||||||| || |||||||||||||||||||||  ||||||||||||| |||| |||||||||||||| || ||||||||||||||| |  |||||||   ||  | |||| |  | ||   | || |   || ||||||   ||  |  ||  |||    | |  | || |||  | |    |||       
GAAGTATTCAAATGCATACATGCTGGTGTATATACGTGAAAGTGACAAGGACAAAATAATTTGCAATGTGGATGAGAAGGACATTGCTGAACATCTCCGGgtaagattctgctattacattta-gtcaattttatttcttcaaatttctatttttggatgcatg--actag--agttcattccatggcttgcaccag---

upper sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 13
lower sequence: PP1S104_2V6.1 (Physcomitrella patens), 5'ss of exon 12
CAAATATTCAAATGCTTATATGCTGGTGTATATACGTGAAGCTGACAAGGACAAAGTAATATGCAATGTGGATGAAAAAGACATTGCTGAACATTTAAGGgtaagtgact-------------attcttacgtacatgtttgtcttctgcatttaaatttaa----tttgct---aaataaatgcagatggcta-atttattttaagataagcatgctctg---------------------------
 ||||| |||||||| || ||||||||||| ||  | ||  |||||||||||||||| |||||||| |||||||| ||||||||||| || ||| |   ||||| |   |             | ||  |||||  || | || ||| |   |||    |||    ||| ||   || |   ||   | ||| | || |  |  ||  | |   |    ||                           
AAAATACTCAAATGCGTACATGCTGGTGTACATCAGAGATTCTGACAAGGACAAAGTTATATGCAACGTGGATGAGAAAGACATTGCAGAGCATCTGCAGgtaaatcctttactggagttggaagtcggacgtat-tgctcgttttcagggcttagtcataaaatttttacttcaaattttgtgttcaaggccagatctgctgcaaattgacggtcacgtggttgaattccatttggtgacattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254342408|gb|GR858570.1|GR858570
EST:     ACAAAGTAATATGCAATGTGGATGAGAAAGACATTGCTGAACATTTAAGG                         GAGAGGTTGAAGAAAGAGCAAGAAGAAAAAGAGCAC
genomic: ACAAAGTAATATGCAATGTGGATGAAAAAGACATTGCTGAACATTTAAGGgtaagtgact ... attaatgcagGAGAGGTTGAAGAAAGAACAAGAAGAAAAAGAGCAC
EST: gi|213611118|gb|DB974992.1|DB974992
EST:     ACAAAGTAATATGCAATGTGGATGAGAAAGACATTGCTGAACATTTAAGG                         GAGAGGTTGAAGAAAGAACAAGAAGAAAAAGAGCAC
genomic: ACAAAGTAATATGCAATGTGGATGAAAAAGACATTGCTGAACATTTAAGGgtaagtgact ... attaatgcagGAGAGGTTGAAGAAAGAACAAGAAGAAAAAGAGCAC
EST: gi|15813774|gb|BI786049.1|BI786049
EST:     ACAAAGTAATATGCAATGTGGATGAGAAAGACATTGCTGAACATTTAAGG                         GAGAGGTTGAAGAAAGAGCAAGAAGAAAAAGAGCACA
genomic: ACAAAGTAATATGCAATGTGGATGAAAAAGACATTGCTGAACATTTAAGGgtaagtgact ... attaatgcagGAGAGGTTGAAGAAAGAACAAGAAGAAAAAGAGCACA
EST: gi|209717383|gb|BW659059.1|BW659059
EST:     ACAAAGTAATATGCAATGTGGATGAGAAAGACATTGCTGAACATTTAAGG                         GAGAGGTTGAAGAAAGAACAAGAAGAAAAAGAGCAC
genomic: ACAAAGTAATATGCAATGTGGATGAAAAAGACATTGCTGAACATTTAAGGgtaagtgact ... attaatgcagGAGAGGTTGAAGAAAGAACAAGAAGAAAAAGAGCAC
EST: gi|15204279|gb|BI427047.1|BI427047
EST:     ACAAAGTAATATGCAATGTGGATGAAAAAGACATTGCTGAACATTTAAGG                         GAGAGGTTGAAGAAAGAACAAGAAGAAAAAGAGCAC
genomic: ACAAAGTAATATGCAATGTGGATGAAAAAGACATTGCTGAACATTTAAGGgtaagtgact ... attaatgcagGAGAGGTTGAAGAAAGAACAAGAAGAAAAAGAGCAC
EST: gi|254333682|gb|GR848600.1|GR848600
EST:     ACAAAGTAATATGCAATGTGGATGAAAAAGACATTGCTGAACATTTAAGG                         GAGAGGTTGAAGAAAGAACAAGAAGAAAAAGAGCAC
genomic: ACAAAGTAATATGCAATGTGGATGAAAAAGACATTGCTGAACATTTAAGGgtaagtgact ... attaatgcagGAGAGGTTGAAGAAAGAACAAGAAGAAAAAGAGCAC
EST: gi|193591103|gb|FK545578.1|FK545578
EST:     CATTGCTGAACATTTAAGG                         GAGAGGTTGAAGAAAGAGCAAGAAGAAAAAGAGCAC
genomic: CATTGCTGAACATTTAAGGgtaagtgact ... attaatgcagGAGAGGTTGAAGAAAGAACAAGAAGAAAAAGAGCAC
EST: gi|193351970|gb|FK315467.1|FK315467
EST:     ACAAAGTAATATGCAATGTGGATGAGAAAGACATTGCTGAACATTTAAGG                         GAGAGGTTGAAGAAAGA
genomic: ACAAAGTAATATGCAATGTGGATGAAAAAGACATTGCTGAACATTTAAGGgtaagtgact ... attaatgcagGAGAGGTTGAAGAAAGA