Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTTGGAGACCCTAGCAAGTTCTTAATCCTTCCTTTACATGGCTCAATGCCTACTGTCAACCAATGTGAAATATTTGAACGTCCTCCCCCTAACAAGAGgcaagcatatttcttttgccaatttcatcattgatggtttgttttggatatatgtttggagaagtttatgagtagaaagttgacaagctctatatataaa...

Basic information

species Glycine max
transcript GLYMA02G35240.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G35240.1 (Glycine max), 5'ss of exon 13
lower sequence: AT2G35920.1 (Arabidopsis thaliana), 5'ss of exon 10
TAGTTGGAGACCCTAGCAAGTTCTTAATCCTTCCTTTACATGGCTCAATGCCTACTGTCAACCAATGTGAAATATTTGAACGTCCTCCCCCTAACAAGAGgcaagcatatttcttttgccaatttcatcattgatggtttgttttggatatatgtttggagaagtttatgagtagaaagttgacaagctctatatataaa
|  |||||||  | |||||||||||| | |||||||||||||| |||||||| || || || ||| ||||||| ||||| ||||| || ||||||||  ||  |||   | |    |  | ||| | |||||  |  | | || |   | |   ||     || |||   |   ||| | |  |    | | ||      
TTCTTGGAGATTCGAGCAAGTTCTTAGTTCTTCCTTTACATGGTTCAATGCCGACGGTTAATCAACGTGAAATTTTTGACCGTCCACCTCCTAACAAACGgttagc-cctctgagctatcgatt-cgtcatt--tcttcttttatcattctgctttgtagcaacttttctaagcgaatgct--ctgcttttgtag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209729559|gb|BW655148.1|BW655148
EST:     CCTACTGTCAACCAATGTGAAATATTTGAACGTCCTCCCCCTAACAAGAG                         AAAAATCGTGCTAGCAACAAATATTGCTGAGAGTAGCATCACCATAGATGA
genomic: CCTACTGTCAACCAATGTGAAATATTTGAACGTCCTCCCCCTAACAAGAGgcaagcatat ... gctgttgtagAAAAATCGTGCTAGCAACAAATATTGCTGAGAGTAGCATCACCATAGATGA
EST: gi|17023496|gb|BM094530.1|BM094530
EST:     CCTACTGTCAACCAATGTGAAATATTTGAACGTCCTCCCCCTAACAAGAG                         AAAAATCGTGCTAGCAACAAATATTGCTGAGAGTAGCATCACCATAGATGA
genomic: CCTACTGTCAACCAATGTGAAATATTTGAACGTCCTCCCCCTAACAAGAGgcaagcatat ... gctgttgtagAAAAATCGTGCTAGCAACAAATATTGCTGAGAGTAGCATCACCATAGATGA