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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAAgtatgtcttgtcccttggttcaaaattcaatttttctttgatttcttatcctttcaactgtaatttgggtttctttatctggatttctgttatatggagc...

Basic information

species Glycine max
transcript GLYMA02G16130.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G321413_T01 (Zea mays), 5'ss of exon 5
GTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAAgt--atgtcttgtcccttggttcaaaattcaatttttctttgatttcttatcctttcaactgtaatttgggtttctttatctggatttctgttatatggagc
||||||||||| || ||||| |||||  |||||||  ||||||||||||| |||||||| || || ||  || |||  |   ||| ||  ||  || |  || |  | ||||  | |   ||  ||||       |     | ||| | | | | |  | | || |  
GTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAGgtgcatctctgataatttgcttgcaacgtctaacttgcagttatttaatttatctttgactgctcaacagaacattatatgttgttatgtaat-tgtgaaa-

upper sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G019361_T03 (Zea mays), 5'ss of exon 11
GTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAAgt--atgtcttgtcccttggttcaaaattcaatttttctttgatttcttatcctttcaactgtaatttgggtttctttatctggatttctgttatatggagc
||||||||||| || ||||| |||||  |||||||  ||||||||||||| |||||||| || || ||  || |||  |   ||| ||  ||  || |  || |  | ||||  | |   ||  ||||       |     | ||| ||| | | |  | |  | |  
GTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAGgtgcatctctgataatttgcttgcaacatctagcttgcagttatttaatttatctttgactgctcaacagaacattatatttggttgtgtaat-tgcgaaa-

upper sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 13
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 12
GTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAAgtatgtcttgtcccttggttcaaaattcaatttttctttgatttcttatcctttcaactgta---atttgggtttctttatctggatttctgt-tatatggagc
|| || || || ||||| || |||||||| ||||||||||||||||| ||||||||||||||||| ||| | |   |   |  |||| |  ||  || |||    |  ||  | ||      |   ||   |    |     || |||   ||  || | | | || |  
GTTAACCAGATTCGGGACTCCTTGGCTATAATGGGTGACAACAGCACAGCCTTTAGCTTACCGCAGgtaaggc--atttgtgtgttctactttgcatattttccagcctttctttcagaaagaaaatacagagcatgaaactttaatcaaaatggctatctttgtgca--

upper sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 11
--------------------GTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAAgtatgtcttgtcccttggttcaaaattcaatttttctttgatttcttatcctttcaactgtaatttgggtttctttatctggatttctgttatatggagc-----
                    || || || || ||||| || ||||||||||||||||| || || || |||||||||||||| |||||||   || | ||||  |     |||   | |  | ||||| |||       | || ||   ||| | | |  ||   || |  | | || | |          
GGGACAAAAACATTGAGCAGGTTAACCAGATTCGGGACTCTTTGGCTATTATGGGTGATAATAGTACAGCCTTTAGCTTACCACAAgtatagatt-ttccttaatc----atttcttctccccttgatgtctctgtagcttaattgattttttgttcttcttgcatgtacgttttttttgtcctttttttt