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TACAGTGGTTGCAACTTGTGGAGGTGGGGCAAAAGCCAAGCTTCTGAAAGATTTGGGAGTTAACAGAGTCATAGACTATCATAGTGAAGATGTAAAAACTgtatgttttttaaatcctgattctttttagagttctttcaaccataactgcttttattgaaacagttaggttaaaaaaatcattataacctaattaacca...
species | Glycine max |
transcript | GLYMA02G15070.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ATTTGGGAGTTAACAGAGTCATAGACTATCATAGTGAAGATGTAAAAACT GTTCTAAGGGAAGAGTTCCCCAAAGGTATTGACATCATCTATGAGTCTGTTEST: gi|4290814|gb|AI441672.1|AI441672
genomic: ATTTGGGAGTTAACAGAGTCATAGACTATCATAGTGAAGATGTAAAAACTgtatgttttt ... aattcttcagGTTCTAAGGGAAGAGTTCCCCAAAGGTATTGACATCATCTATGAGTCTGTT
EST: ATTTGGGAGTTAACAGAGTCATAGACTATCATAGTGAAGATGTAAAAACT GTTCTAAGGGAAGAGTTCCCCAAAGGTATTGACATCATCTATGAGTCTGTTEST: gi|7926508|gb|AW832534.1|AW832534
genomic: ATTTGGGAGTTAACAGAGTCATAGACTATCATAGTGAAGATGTAAAAACTgtatgttttt ... aattcttcagGTTCTAAGGGAAGAGTTCCCCAAAGGTATTGACATCATCTATGAGTCTGTT
EST: ATTTGGGAGTTAACAGAGTCATAGACTATCATAGTGAAGATGTAAAAACT GTTCTAAGGGAAGAGTTCCCCAAAGGTATTGACATCATCTATGAGTCTGTT
genomic: ATTTGGGAGTTAACAGAGTCATAGACTATCATAGTGAAGATGTAAAAACTgtatgttttt ... aattcttcagGTTCTAAGGGAAGAGTTCCCCAAAGGTATTGACATCATCTATGAGTCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAGTGGTTGCAACTTGTGGAGGTGGGGCAAAAGCCAAGCTTCTGAAAGATTTGGGAGTTAACAGAGTCATAGACTATCATAGTGAAGATGTAAAAACTgtatgttttttaaatcctgattctttttagagttctttcaaccataactgcttttattgaaacagttaggttaaaaaaatcattataacctaattaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaaa