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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATTGgtaagttgatttgtctaggttcagaagttatgtatgctcttgttcgttccacatgtgtatcatgtatatagaattgaatcaaattatagatactatcttg...

Basic information

species Glycine max
transcript GLYMA02G10590.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10590.2 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G068212_T01 (Zea mays), 5'ss of exon 13
GTTGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATTGgtaagttgatttgtctaggttcag-aagttatgtatgctcttgttcgttccacatgtgtatcatgtatatagaattgaatcaaattatagatactatcttg-
||||   | ||| | || ||||| |||||||||||||||||||||||||| |||| |    || ||    ||     || || ||      ||   | | || |||  |   |  |||| | |||    | |||    | | |  |   |    
GTTGCATTCTCATTGGCCTTTGTGATTCATGAGTCAGCAAATCCACATATAGgtatgagagttggttctagtcagctaaattgtgccatacctcccttgatc-acaaatcattagtgtacaaaga-caaagtcatggaaaacacccacacccaa

upper sequence: GLYMA02G10590.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 5'ss of exon 13
GTTGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATTGgtaagttgatttgtctaggttcagaagttatgtatgctcttgttcgttccaca-----tgtgtatcatgtatatag--aattgaatcaaattatagatactatcttg
||||| | ||| |||||||||||||| ||||||||||||||||| | | ||||| |||     |   || ||  | | |||   |||||| ||  | ||   | |     | ||  || || |  |    | || || ||  ||||   || |      
GTTGGTGCTTCGCTTGCTTTTGTCATCCATGAGTCAGCAAATCCTCGTCTTGgtgagtgagactcattatgtcaaaatgtt---tatgctattacttgtgttaaaacagttttgcttcctgcactttattacttaaaacattttatgcgtattgc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254323182|gb|GR835790.1|GR835790
EST:     GTCAGCAAATCCACATATTG                         CTGTTTTGGGTCGTTTGCCAGGGACAACTGTTTATAGGAATGTTAAACAGT
genomic: GTCAGCAAATCCACATATTGgtaagttgat ... tgcactgcagCTGTTTTGGGTCGTTTGCCAGGGACAACTGTTTATAGGAATGTTAAACAGT
EST: gi|51335397|gb|CO979263.1|CO979263
EST:     TGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATTG                         CTGTNNNGGGTCGTTTGCCAGGGACAACTGTTTATAGGAATGTTAAACAGT
genomic: TGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATTGgtaagttgat ... tgcactgcagCTGTTTTGGGTCGTTTGCCAGGGACAACTGTTTATAGGAATGTTAAACAGT