Sequence
atgc intronic sequence ATGC exonic sequenceCATGGCTGAGAAGGCTGTGCAATTGGCTGTTGAAACATGGGGCAAGAGATCCTTAACTGAACTTGAAGCAGAGGAGCGCCTATCCTATACCTGTGAAAAGgtgacaatccggcgatgatggattttttagtgtaattaatgcttgaaattagaatgtttgagtaactaactactttgataagtaaagctttcttggacatatcacttttgtgaattttccatcttcaacttgtcattatatatttttatgtag
Basic information
species | Glycine max |
transcript | GLYMA02G01060.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G01060.2 (Glycine max), 5'ss of exon 13
lower sequence: AT4G01800.1 (Arabidopsis thaliana), 5'ss of exon 12
CATGGCTGAGAAGGCTGTGCAATTGGCTGTTGAAACATGGGGCAAGAGATCCTTAACTGAACTTGAAGCAGAGGAGCGCCTATCCTATACCTGTGAAAAGgtga-caatccggcgatgatggattttttagtgta-attaatgcttgaaattagaatgtttgagtaactaactactttgataagtaaagctttcttggacatatcacttttgtgaattttccatcttcaacttgtcattatatatttttatgtag
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GCTAGCTGAAGAAGCTGTACAATCAGCTGTAGAGGCTTGGGGCCAGAAATCGTTAACTGAGCTTGAAGCAGAGGAACGTTTATCTTATTCTTGTGAAAAGgtgagcaactgagaaatcctgga------agtatatgttcatatgttaaatttta--gtttgagtcatttctttcctccttttctcag-------------------------------------------------------------------
upper sequence: GLYMA02G01060.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 13
CATGGCTGAGAAGGCTGTGCAATTGGCTGTTGAAACATGGGGCAAGAGATCCTTAACTGAACTTGAAGCAGAGGAGCGCCTATCCTATACCTGTGAAAAGgtgacaatccggcgatgatg--gatttt--ttagtgtaattaatgcttgaaattagaatgtttgagtaactaactactttgataagtaaagctttcttggacatatcacttttgtgaattttccatcttcaacttgtcattatatatttttatgtag
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GCTGGCTGAGGAAGCTGTGGAGTTAGCTGTCAAAACTTGGGGAAAGAGATCGTTAACTGAGCTTGAAGCTGAGGAACGGTTGTCTTATTCTTGTGAAAAGgtga-aatttgcagaagatactgattttcatttatagaattatgattgcaaattaaaagacatttctacacagc-ac----aagaataaatttcacttgattgtgt---------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19348856|gb|BM893388.1|BM893388EST: CTATACCTGTGAAAAG GGTCCTGCTCAAGATGAAGTCATTGCCAAGCTGAGAAATGCATTTCTGGAA
genomic: CTATACCTGTGAAAAGgtgacaatcc ... ttttatgtagGGTCCTGCTCAAGATGAAGTCATTGCCAAGCTGAGAAATGCATTTCTGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATGGCTGAGAAGGCTGTGCAATTGGCTGTTGAAACATGGGGCAAGAGATCCTTAACTGAACTTGAAGCAGAGGAGCGCCTATCCTATACCTGTGAAAAGgtgacaatccggcgatgatggattttttagtgtaattaatgcttgaaattagaatgtttgagtaactaactactttgataagtaaagctttcttggacatatcacttttgtgaattttccatcttcaacttgtcattatatatttttatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG