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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttagatggaaaagattattttgttatcactttctaccaagaaaaaaaaatgaaatcatctatcaaggaaatttctgaactgcttagtagttgtatatagttaggtgctaacggtttcatgcattaatgcag

Basic information

species Glycine max
transcript GLYMA01G42940.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31467297|gb|CD409325.1|CD409325
EST:     CCAACCAGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: CCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|18039168|gb|BM307462.1|BM307462
EST:     GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|254332376|gb|GR846421.1|GR846421
EST:     GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|192332460|gb|FK024221.1|FK024221
EST:     GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|151395947|gb|EV265824.1|EV265824
EST:     GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|151400533|gb|EV270347.1|EV270347
EST:     GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|192332461|gb|FK024222.1|FK024222
EST:     GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|193422007|gb|FK386680.1|FK386680
EST:     CATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: CATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
EST: gi|7284908|gb|AW597395.1|AW597395
EST:     GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG                         GGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA
genomic: GGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTGgtactttaga ... attaatgcagGGACCCTGATGACATTGGGGCGGAAGCGAGGAGATTTGAGGGTTTTGTGGA