Sequence
atgc intronic sequence ATGC exonic sequenceATCAGCCTTGCCGGCAGTATAATCCATGTGGTTGCCAATCGGCTTGTGGAAAGCAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGgtaagcttttgaggttgctaaatagaaccttgatgaaagagaggcatgtagaattgtagtgttttgctgattttctgcattccatgctggtttcacaaat...
Basic information
species | Glycine max |
transcript | GLYMA01G39490.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G39490.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os06g16390.1 (Oryza sativa), 5'ss of exon 11
ATCAGCCTTGCCGGCAGTATAATCCATGTGGTTGCCAATCGGCTTGTGGAAAGCAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGgtaagcttttgaggttgctaa-atag--aaccttgatgaaagagaggcatgtagaattgtagtgttttgctgattttctgcattccatgctggttt-cacaaat
|||||||||| || || || | ||| ||||||||||| || || ||||| ||||| ||||| ||||| |||||| |||||||||||||| |||||||||| |||| | || | | || | || || | | | | |||| | | | ||||| || | | || | | | ||
ATCAGCCTTGTCGACAATACACTCCTTGTGGTTGCCAGTCTGCATGTGGGAAGCAATGTCCATGTCTCACAAATGGTACCTGCTGTGAGAAATACTGTGGgtgagctacttcaattattcatattgcagactccgagaacattttttcttctagatattaataatgttgcttatgaaaacaaaactgtgtagatgtatac----
upper sequence: GLYMA01G39490.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G157820_T02 (Zea mays), 5'ss of exon 11
ATCAGCCTTGCCGGCAGTATAATCCATGTGGTTGCCAATCGGCTTGTGGAAAGCAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGgtaagcttttgaggttgctaaatagaaccttgatgaaagagaggcatgtagaattgtagtgttttgctgattttctgcattccatgct--ggtttcacaaat-------
|||||||||| || || |||||||| |||||||| ||||| | || |||||||||||||| |||||| |||||| || || |||||||| |||||||||| || || | || || | | | | | ||||| | || | | || | | | | | || || | ||||||
ATCAGCCTTGTCGACAATATAATCCTTGTGGTTGTCAATCTACATGCGGAAAGCAGTGTCCATGTCTTTCAAATGGGACATGTTGTGAGAAATACTGTGGgtgag-ttacatgttttctttgcatcagcctatta--------gcatgcataaatttggttgtcaatctgcatgtggaaaccagtgtccatgtcttacaaatgggacac
upper sequence: GLYMA01G39490.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv07s0031g00320.t01 (Vitis vinifera), 5'ss of exon 9
ATCAGCCTTGCCGGCAGTATAATCCATGTGGTTGCCAATCGGCTTGTGGAAAGCAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGgtaagcttttgaggttgctaaatagaaccttgatgaaagagaggcatgtagaattgtagtgttttgctgattttctgcattccatgctggttt--cacaaat
|||||||||| |||||||| || ||||||||||||||||| || ||||||||||||||| ||||||||| |||||| || |||||||| || |||||||||| ||| |||| || | ||| ||| | | | | || | |||| | | | | | | ||| || ||
ATCAGCCTTGTCGGCAGTACAACCCATGTGGTTGCCAATCTGCATGTGGAAAGCAGTGTGCTTGTCTTCTAAATGGGACATGCTGTGAAAAATACTGTGGgtgagcctttgt--ttctcattctgaatagcacagaattaaatataaactcatttcctggattttcatttcccaattcttccaaaaatggccaagtactgatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254327702|gb|GR834667.1|GR834667EST: AAGCAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGG ATGCCCCAAGAGCTGCAAGAATCGATTTCGTGGCTGTCATTGTGCTAAGAG
genomic: AAGCAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGgtaagctttt ... tcatatcaagATGCCCCAAGAGCTGCAAGAATCGATTTCGTGGCTGTCATTGTGCTAAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCAGCCTTGCCGGCAGTATAATCCATGTGGTTGCCAATCGGCTTGTGGAAAGCAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGgtaagcttttgaggttgctaaatagaaccttgatgaaagagaggcatgtagaattgtagtgttttgctgattttctgcattccatgctggtttcacaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaga