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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGATCAGCAAGGAGTCAAGAGATATTCCGGTGCTTTACCTACTTCAAAGCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAGgtgacccaattggttttacaatttacatatttactgattagttccatgaatgtatgcacgtttttttattttgtgtttgatgtggaccaacaggaccaca...

Basic information

species Glycine max
transcript GLYMA01G35190.2
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19938441|gb|BQ081721.1|BQ081721
EST:     GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAG                         GTGTGCAACGGAAGCTGGATATGGTAAATCAG
genomic: GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAGgtgacccaat ... aatgttacagGTGTGCAACGGAAGCTGGATATGGTAAATCAG
EST: gi|22927291|gb|BU544430.1|BU544430
EST:     GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAG                         GTGTGCAACGGAAGCTGGATATGGTAAATCAG
genomic: GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAGgtgacccaat ... aatgttacagGTGTGCAACGGAAGCTGGATATGGTAAATCAG
EST: gi|23730262|gb|BU763229.1|BU763229
EST:     GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAG                         GTGTGCAACGGAAGCTGGATATGGTAAATCAG
genomic: GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAGgtgacccaat ... aatgttacagGTGTGCAACGGAAGCTGGATATGGTAAATCAG
EST: gi|26059828|gb|CA802742.1|CA802742
EST:     GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAG                         GTGTGCAACGGAAGCTGGATATGGTAAATCAG
genomic: GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAGgtgacccaat ... aatgttacagGTGTGCAACGGAAGCTGGATATGGTAAATCAG
EST: gi|19348400|gb|BM892932.1|BM892932
EST:     GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAG                         GTGTGCAACGGAAGCTGGATATGGTAAATCAG
genomic: GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAGgtgacccaat ... aatgttacagGTGTGCAACGGAAGCTGGATATGGTAAATCAG
EST: gi|9203919|gb|BE330143.1|BE330143
EST:     GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAG                         GTGTGCAACGGAAGCTGGATATGGTAAATCAG
genomic: GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAGgtgacccaat ... aatgttacagGTGTGCAACGGAAGCTGGATATGGTAAATCAG
EST: gi|15336881|gb|BI497537.1|BI497537
EST:     GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAG                         GTGTGCAACGGAAGCTGGATATGGTAAATCAG
genomic: GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAGgtgacccaat ... aatgttacagGTGTGCAACGGAAGCTGGATATGGTAAATCAG
EST: gi|6454955|gb|AW185565.1|AW185565
EST:     GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAG                         GTGTGCAACGGAAGCTGGATATGGTAAATCAG
genomic: GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAGgtgacccaat ... aatgttacagGTGTGCAACGGAAGCTGGATATGGTAAATCAG
EST: gi|298178671|gb|HO024406.1|HO024406
EST:     GCTCTCCGATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAG                         GTGTGCAACGGAAGCTGGATATGGTAAATCAG
genomic: GCTCTCCAATAATTTTTCTTCCATGAAATTACATCCTCCTTTAGCTTCAGgtgacccaat ... aatgttacagGTGTGCAACGGAAGCTGGATATGGTAAATCAG