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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAACGTCTTTCAGATTGCATTTGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTGgtaagcctacctctggaaaaatttcttttcttttgtgcatgttaatgttcttgctgatactgaagggttttaaatttggaaatatcag

Basic information

species Glycine max
transcript GLYMA01G30400.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15663627|gb|BI700998.1|BI700998
EST:     TTGCATTTGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTG                         GGATGGAGAAGAAAGAAGCCTAGTGGTAGGTTTCAATTGTCTACATGAGGT
genomic: TTGCATTTGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTGgtaagcctac ... gaaatatcagGGATGGAGAAGAAAGAAGCCTAGTGGTAGGTTTCAATTGTCTACATGAGGT
EST: gi|16344579|gb|BI970174.1|BI970174
EST:     TTGCATTTGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTG                         GGATGGAGAAGAAAGAAGCCTAGTGGTAGGTTTCAATTGTCTACATGAGGT
genomic: TTGCATTTGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTGgtaagcctac ... gaaatatcagGGATGGAGAAGAAAGAAGCCTAGTGGTAGGTTTCAATTGTCTACATGAGGT
EST: gi|21479814|gb|BQ576497.1|BQ576497
EST:     TTGCATTTGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTG                         GGATGGAGAAGAAAGAAGCCTAGTGGTAGGTTTCAATTGTCTACATGAGGT
genomic: TTGCATTTGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTGgtaagcctac ... gaaatatcagGGATGGAGAAGAAAGAAGCCTAGTGGTAGGTTTCAATTGTCTACATGAGGT
EST: gi|16345834|gb|BI971429.1|BI971429
EST:     TTGCATTTGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTG                         GGATGGAGAAGAAAGAAGCCTAGTGGTAGGTTTCAATTGTCTACATGAGGT
genomic: TTGCATTTGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTGgtaagcctac ... gaaatatcagGGATGGAGAAGAAAGAAGCCTAGTGGTAGGTTTCAATTGTCTACATGAGGT
EST: gi|14991711|gb|BI317384.1|BI317384
EST:     TTGCATTTGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTG                         GGATGGAGAAGA
genomic: TTGCATTTGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTGgtaagcctac ... gaaatatcagGGATGGAGAAGA
EST: gi|209716276|gb|BW657579.1|BW657579
EST:     TTGCATTTGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTG                         GGATGGAGAAGAAAGAAGCCTAGTGGTAGGTTTCAATTGTCTACATGAGGT
genomic: TTGCATTTGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTGgtaagcctac ... gaaatatcagGGATGGAGAAGAAAGAAGCCTAGTGGTAGGTTTCAATTGTCTACATGAGGT
EST: gi|17022512|gb|BM093546.1|BM093546
EST:     TTGCATTTGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTG                         GGATGGAGAAGA
genomic: TTGCATTTGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTGgtaagcctac ... gaaatatcagGGATGGAGAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACAACGTCTTTCAGATTGCATTTGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTGgtaagcctacctctggaaaaatttcttttcttttgtgcatgttaatgttcttgctgatactgaagggttttaaatttggaaatatcag

- - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC