Sequence
atgc intronic sequence ATGC exonic sequenceCAACTTTTTATACCCTATATCTGCAATTCGTTCTCATTTTACTCAGTCTATCAATTGGTCTGGCATTATATACCATTTGAAAGATGGAAAAATCAACAAGgtaagtcaaggttttatgtcaaccttagcttgactttacaagttgactctagaagtcgaaattactactccaatctttcattccaactgctaccgtatat...
Basic information
species | Glycine max |
transcript | GLYMA01G01130.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G01130.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os01g67870.1 (Oryza sativa), 5'ss of exon 13
CAACTTTTTATACCCTATATCTGCAATTCGTTCTCATTTTACTCAGTCTATCAATTGGTCTGGCATTATATACCATTTGAAAGATGGAAAAATCAACAAGgtaagtcaaggttttatgt-caaccttagcttgactttacaa-gttgactctagaa--gtcgaaattactactccaatctttcattc-caactgctaccgtatat-----------------------------
||||||| | ||||||||||||||| | | ||||||||| | || || |||||||||||||| || | ||||| |||||||||| ||||| | ||||||| |||| | |||||| || || |||| | | || || | || | || || | | | | | | | | ||||
CAACTTTCTCTACCCTATATCTGCATTCAGGTCTCATTTTTCCCAATCAATCAATTGGTCTGGTATCAGGTACCACCTGAAAGATGGGAAAATAAGCAAGgtac-tcaacatattatgtacatttttcctttgatgacaaaccattttctttgcaatcttttaagaaacccacctggtaaattgtcctctgtttgagtcctatacaactaatctaaattgttatggtcgtgcag
upper sequence: GLYMA01G01130.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv11s0016g03130.t01 (Vitis vinifera), 5'ss of exon 13
CAACTTTTTATACCCTATATCTGCAATTCGTTCTCATTTTACTCAGTCTATCAATTGGTCTGGCATTATATACCATTTGAAAGATGGAAAAATCAACAAGgtaagtcaa-ggttttatgtcaaccttagc--ttgactttacaagttgactctagaagtcgaaattactactccaatctttcattccaactgctaccgtatat
|| ||||| |||||| | |||||| | ||||| ||||| ||||| ||||||||||||||||| || | |||||| ||||||||||| || || | ||||||| || | | | | || | || || | ||| | |||| | | || | || | |||| || | |||
TAATTTTTTGTACCCTGTTTCTGCATTCCGTTCACATTTGACTCAATCTATCAATTGGTCTGGTATCAGATACCACTTGAAAGATGGGAAGATAAGCAAGgtatgttgacagaggcctttaaatcctaaaaattcaattt-tagcttgatatttttcctttgaaatgatattttaatcattgccatggctgaggattctat--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10238849|gb|BE807737.1|BE807737EST: TCAATTGGTCTGGCATTATATACCATTTGAAAGATGGAAAAATCAACAAG ATACATAGAATACCAAGAAGGCAGGATGTGGCTCCAGTTTTCACTGACTTG
genomic: TCAATTGGTCTGGCATTATATACCATTTGAAAGATGGAAAAATCAACAAGgtaagtcaag ... tattattcagATACATAGAATACCAAGAAGGCAGGATGTGGCTCCAGTTTTCACTGACTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAACTTTTTATACCCTATATCTGCAATTCGTTCTCATTTTACTCAGTCTATCAATTGGTCTGGCATTATATACCATTTGAAAGATGGAAAAATCAACAAGgtaagtcaaggttttatgtcaaccttagcttgactttacaagttgactctagaagtcgaaattactactccaatctttcattccaactgctaccgtatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA