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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttctctcatcatttagcatattgtcattagttttcagtatatcttctttgaaatgtgaaacatgtgatggcatgcgacacatttttatcttccc...

Basic information

species Glycine max
transcript GLYMA01G00430.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18733901|gb|BM527876.1|BM527876
EST:     ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG                         ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
genomic: ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttct ... ctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
EST: gi|22524821|gb|BU083632.1|BU083632
EST:     ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG                         ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
genomic: ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttct ... ctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
EST: gi|42723073|gb|CK768972.1|CK768972
EST:     ATATGAGCTTAAACGATCTTATAATTGGTTGGAG                         ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
genomic: ATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttct ... ctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
EST: gi|18732433|gb|BM527041.1|BM527041
EST:     ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG                         ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
genomic: ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttct ... ctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
EST: gi|19269470|gb|BM885726.1|BM885726
EST:     ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG                         ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
genomic: ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttct ... ctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
EST: gi|13789963|gb|BG652554.1|BG652554
EST:     ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG                         ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
genomic: ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttct ... ctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
EST: gi|213590932|gb|DB973729.1|DB973729
EST:     ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG                         ATAATCAATCCTGCTGAAACTTTTG
genomic: ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttct ... ctgttgtcagATAATCAATCCTGCTGAAACTTTTG
EST: gi|24136389|gb|BU926899.1|BU926899
EST:     ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAG                         ATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC
genomic: ATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttct ... ctgttgtcagATAATCAATCCTGCTGAAACTTTTGGTGACATCGTTATTGATTATCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGAAGATGGTGGTTTTGCAACATATGAGCTTAAACGATCTTATAATTGGTTGGAGgtatccttctctcatcatttagcatattgtcattagttttcagtatatcttctttgaaatgtgaaacatgtgatggcatgcgacacatttttatcttccc

- - - - TGGTGG
- - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG