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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATACCTCCTCGAAATTCGGTTGTTATATATAGGTTGATTTTGTGGTGGCTACTTGCGATTCCAACAATTCGTGAGTACAACTCATACCTTCAAGACAGgtacagtcttctgcatctctcttgtttccctcccacccctacccaaaagaagtcatatttttctgttttgcatagtgtgtttaatgttgatgaatgacattggaaatatcctactaagattttgacattttttcctgtcatatattcgttgtgaatttttcag

Basic information

species Glycine max
transcript GLYMA20G25830.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 12
lower sequence: AT1G15110.2 (Arabidopsis thaliana), 5'ss of exon 11
GGATACCTCCTCGAAATTCGGTTGTTATATATAGGTTGATTTTGTGGTGGCTACTTGCGATTCCAACAATTCGTGAGTACAACTCATACCTTCAAGACAGgtacagtcttctgcatctctcttgtttccctcccacccctacccaaaagaagtcatatttttctgttttgcatagtgtgtttaatgttgatgaatgacattggaaatatcctactaagattttgacattttttcctgtcatatattcgttgtgaatttttcag
|||| || ||||||||  | ||  || | |||||| |||| |||||||||||  | ||||| |||||||  || |||||||| ||||| |||||||||||||| ||    ||  | |      | |                    ||  |||            || |  |||   ||| || | ||| |   | |||                                                                
GGATCCCCCCTCGAAACCCAGTGATTCTCTATAGGCTGATCTTGTGGTGGCTCATAGCGATACCAACAACACGGGAGTACAATTCATATCTTCAAGACAGgtaaag----ctatagccactgcgatattggttggagttagtttggaaagagtt-----------ttgtatataacttgtgtagttttggttgttcacag---------------------------------------------------------------

upper sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 11
GGATACCTCCTCGAAATTCGGTTGTTATATATAGGTTGATTTTGTGGTGGCTACTTGCGATTCCAACAATTCGTGAGTACAACTCATACCTTCAAGACAGgtacagtcttctgcatctctcttgtttccctcccacccctacccaaaagaagtcatatttttctgttttgcatagtgtgtttaatgttgatgaatgacattggaaatatcctactaagattttgacattttttcctgtcatatattcgttgtgaatttttcag
|||| |||||||||||  | ||  || | ||| ||||||| |||||||||||| |||| || |||||||||||||||||||| |||||| | || |||||||||  |||       ||   |||      |   ||    |  | ||  | | ||        |  | ||||||  ||  | ||  ||     |     | | |||| |  |       ||  |                                       
GGATTCCTCCTCGAAACCCTGTGATTGTGTATCGGTTGATCTTGTGGTGGCTAATTGCAATACCAACAATTCGTGAGTACAATTCATACTTACAGGACAGgtactatctctccttgcttatttgcaaatattatacttg-atactaagaatgccaaccagcattagtgtgcatatagt--tcaaatttttcttacattttggtaaatgttgtgtcgttcttcag---------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15664936|gb|BI702307.1|BI702307
EST:     CTACTTGCGATTCCAACAATTCGTGAGTACAACTCATACCTTCAAGACAG                         AAAGCCAGTGAAAAAGGTCGGAGCATATTGTTGGCTCTCTCTTGCCATTTG
genomic: CTACTTGCGATTCCAACAATTCGTGAGTACAACTCATACCTTCAAGACAGgtacagtctt ... aatttttcagAAAGCCAGTGAAAAAGGTCGGAGCATATTGTTGGCTCTCTCTTGCCATTTG
EST: gi|27427251|gb|CA938771.1|CA938771
EST:     CTACTTGCGATTCCAACAATTCGTGAGTACAACTCATACCTTCAAGACAG                         AAAGCCAGTGAAAAAGGTCGGAGCATATTGTTGGCTCTCTCTTGC
genomic: CTACTTGCGATTCCAACAATTCGTGAGTACAACTCATACCTTCAAGACAGgtacagtctt ... aatttttcagAAAGCCAGTGAAAAAGGTCGGAGCATATTGTTGGCTCTCTCTTGC