Sequence
atgc intronic sequence ATGC exonic sequenceATTACTTACACAAGTGATTACTTCCAAGAATTGTACGAATTAGCAGTGGAGCTCATAAAAAAGGGTCATGCTTATGTTGATCATCAGgttggtatctaaacatctgaatagcctattactacaaatattttacacgttcatttgtgtaaaatgtttcattggttctttcttttgggtggatttataa...
Basic information
species | Glycine max |
transcript | GLYMA20G25120.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 12
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 12
ATTACTTACACAAGTGATTACTTCCAAGAATTGTACGAATTAGCAGTGGAGCTCATAAAAAAGGGTCATGCTTATGTTGATCATCAGgttggt---atctaaa-catctga---atagcctattactacaaatatt--ttacacgttcatttgt-gtaaaatgtttcattggttctttcttttggg-tggatttataa----------------------------------------
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ATTACATACACCAGTGATTATTTCCAGGAACTGTATGATTTGGCAGTGGAGTTGATTCGGAGAGGTCATGCTTATGTTGATCATCAGgttgaatcaatttaaaatttctgacatatggattcctgttacttttaccaattatatgtcattctttagttctaagctgtactgcaagtcagtctggaactttatccacactaaaacttatcctatcgagtaattgtttttacacttttag
upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 12
ATTACTTACACAAGTGATTACTTCCAAGAATTGTACGAATTAGCAGTGGAGCTCATAAAAAAGGGTCATGCTTATGTTGATCATCAGgttggtatctaaacatctgaatagcctattactacaaatattttacacgttcatttgtgtaaaatgtttcattggtt-ctttcttttgggtggatttataa--
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GTTACTTACACCAGTGATTATTTCCAAGATTTGTATGATCTAGCAGTGGAGCTAATACGAAGGAATCATGCCTATGTTGATCATCAGgttgattttttattatgagtctaaactctcgaaatcatttttctggaagttta---aagaaaacttgcccgtttatagcttttttctgtttttattttcttta
upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 12
ATTACTTACACAAGTGATTACTTCCAAGAATTGTACGAATTAGCAGTGGAGCTCATAAAAAAGGGTCATGCTTATGTTGATCATCAGgttggtatctaaacat---ctgaatagcctattactacaaatattttacacgttcatttgtgtaaaatgtt-tcattggttctttcttttgggtggatttataa
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ATCACCTATACCAGTGACTATTTCCAAGATCTTTATGATCTTGCAGTGGAGCTGATAAGAAGGGGCCAAGCTTATGTTGATCACCAGgttgcttactaaatataaattatatgattgatttc-atacataaatctgatatttttttatttcattccttataattaattcttggatactgctaaata-at--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151409608|gb|EV279416.1|EV279416EST: AATTAGCAGTGGAGCTCATAAAAAAGGGTCATGCTTATGTTGATCATCAG ACACCTGATGAGATAAAGGAGTATAGGGAGAAGAAACTGAACAGTCCTTGG
genomic: AATTAGCAGTGGAGCTCATAAAAAAGGGTCATGCTTATGTTGATCATCAGgttggtatct ... ttggttgtagACACCTGATGAGATAAAGGAGTATAGGGAGAAGAAACTGAACAGTCCTTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTACTTACACAAGTGATTACTTCCAAGAATTGTACGAATTAGCAGTGGAGCTCATAAAAAAGGGTCATGCTTATGTTGATCATCAGgttggtatctaaacatctgaatagcctattactacaaatattttacacgttcatttgtgtaaaatgtttcattggttctttcttttgggtggatttataa
- - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtgg