Sequence
atgc intronic sequence ATGC exonic sequenceTGATTTGTGGAAGCACTTATCTCCTATGGACGTGTTCATCATTGGATATGGCgtaagagaatacatatacatatacatcaattaagtggttttactgaacccattgacatcaactaatcatgtagccaacctcaccttgtgggataaggcttagtggttgttgttgtttttgtatcatgaaaactaaattttcccaattatatcagcatgctgccttgtcattcttttctatttatttgtttcag
Basic information
species | Glycine max |
transcript | GLYMA20G25100.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv00s0449g00010.t01 (Vitis vinifera), 5'ss of exon 5
TGATTTGTGGAAGCACTTATCTCCTATGGACGTGTTCATCATTGGATATGGCgtaagagaatacatatacatatacatcaattaagtggttttactgaacccattgacatcaacta-atcatg--tagccaacctcaccttgtgggataaggcttagtggttgttgttgtttttgtatcatgaaaactaaattttcccaattatatcagcatgctgccttgtcattcttttctatttatttgtttcag
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TGGCTTGTGGAAACAGTTGTCTCCTATGGATGTTTTCATCATTGGTTATGGGgtaagaggtgatcttta---aaatattatatgtttgcattcattaaatgttagggtgttggttttattttcattagttgaactaagattgttgaataaa--tgag-------------------------------------------------------------------------------------------
upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 5'ss of exon 5
TGATTTGTGGAAGCACTTATCTCCTATGGACGTGTTCATCATTGGATATGGCgtaagagaatacatatacatatacatcaattaagtggttttactgaac-ccattgacatcaactaatcatg--tagccaacctcaccttgtgggataaggcttagtggttgttgttgtttttgtatcatgaaaactaaattttcccaattatatcagcatgctgccttgtcattcttttctatttatttgtttcag
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TGGCTTGTGGAAACAGTTGTCTCCTATGGATGTTTTCATCATTGGTTATGGGgtaagaggtgatcttta---aaatattacatgtttgcattcattaaatgttagtgtgttggttttattttcattagttgaactaagatcgttgaataaa--tgag-------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208331653|gb|GE132366.1|GE132366EST: ATTTGTGGAAGCACTTATCTCCTATGGACGTGTTCATCATTGGATATGGC GTATTAAACTTCATGTGGCTAAAATTTTTACTGAT
genomic: ATTTGTGGAAGCACTTATCTCCTATGGACGTGTTCATCATTGGATATGGCgtaagagaat ... tttgtttcagGTGTTAAACTTCATGTGGCTAAAATTTTTACTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATTTGTGGAAGCACTTATCTCCTATGGACGTGTTCATCATTGGATATGGCgtaagagaatacatatacatatacatcaattaagtggttttactgaacccattgacatcaactaatcatgtagccaacctcaccttgtgggataaggcttagtggttgttgttgtttttgtatcatgaaaactaaattttcccaattatatcagcatgctgccttgtcattcttttctatttatttgtttcag
- - - TGGAAG