1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGTGCCCAACATAAAGTTCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCGgtaagtattatacttgtgtttccatcctctgttcatctttgtttgtcttagactctaactgtgaacatcatttgccattcag
species | Glycine max |
transcript | GLYMA20G24790.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCG GTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCTEST: gi|192298924|gb|FG987669.1|FG987669
genomic: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCGgtaagtatta ... tgccattcagGTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCT
EST: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCG GTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCTEST: gi|9205515|gb|BE331739.1|BE331739
genomic: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCGgtaagtatta ... tgccattcagGTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCT
EST: TCAATGTGGCAAACGTATTAGAGTACATCTTTCCCATCGTTGATCAGTCG GTCGTGGAGACGACTATTCGTTCATGATCTG-TTGAACTCAGTGAGGAEST: gi|207795028|gb|GD765367.1|GD765367
genomic: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCGgtaagtatta ... tgccattcagGTCGTGGAGAAGACTATTCGTCCATG-TCTGGTTGAGCTCAGTGAGGA
EST: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCG GTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCTEST: gi|192332344|gb|FK026009.1|FK026009
genomic: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCGgtaagtatta ... tgccattcagGTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCT
EST: TTAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCG GTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCTEST: gi|151394585|gb|EV264456.1|EV264456
genomic: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCGgtaagtatta ... tgccattcagGTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCT
EST: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCG GTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCTEST: gi|193438870|gb|FK407117.1|FK407117
genomic: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCGgtaagtatta ... tgccattcagGTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCT
EST: TCGTTGATCAGTCG GTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCTEST: gi|6914739|gb|AW396269.1|AW396269
genomic: TCGTTGATCAGTCGgtaagtatta ... tgccattcagGTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCT
EST: TCAATGTGGCAAAGGTATTAGAGTCCATCTTTCCCATCGTTGATCAGTCG GTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATEST: gi|21601181|gb|BQ611512.1|BQ611512
genomic: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCGgtaagtatta ... tgccattcagGTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGAT
EST: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCG GTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCTEST: gi|254327333|gb|GR836942.1|GR836942
genomic: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCGgtaagtatta ... tgccattcagGTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCT
EST: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCG GTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCTEST: gi|308098474|gb|HO760215.1|HO760215
genomic: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCGgtaagtatta ... tgccattcagGTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCT
EST: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCG GTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCTEST: gi|208237619|gb|GE028865.1|GE028865
genomic: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCGgtaagtatta ... tgccattcagGTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCT
EST: CCATCTTCCCCATCGTTGATCAGTCG GTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGGGGATCCTEST: gi|308098470|gb|HO760211.1|HO760211
genomic: CCATCTTCCCCATCGTTGATCAGTCGgtaagtatta ... tgccattcagGTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCT
EST: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCG GTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCT
genomic: TCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCGgtaagtatta ... tgccattcagGTCGTGGAGAAGACTATTCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGCCCAACATAAAGTTCAATGTGGCAAAGGTATTAGAGTCCATCTTCCCCATCGTTGATCAGTCGgtaagtattatacttgtgtttccatcctctgttcatctttgtttgtcttagactctaactgtgaacatcatttgccattcag
- - - - - - - - - - - - GCAAAG