Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgattttggaagataggctatcgtgtccgtgactctggtctttttttgttttcattaataattttctggctgactttttgtatgttattggtgcgtgtaccag

Basic information

species Glycine max
transcript GLYMA20G22600.3
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G22600.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 12
GATGCCTTGACGCATCCTTTCTTCGACGAGCTTCGTGATCCAAATACTCGCTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgattttggaagataggctatcgtgtccgtgactctggtctttttttgttttcattaataattttctggctgactttttgtatgttattggtgc-gtgtaccag
||||||||||| ||| | |||||||| ||||| |||||  |||  || ||| |||||||||||||||| |||||||||||||| || || ||  | || ||||||      |    | | |    ||  | || |   |  ||      | ||||||||      ||  || |  |||| || || | || |  || | | ||  | |||
GATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACCCGCCTGCCAAATGGCCGATTTCTTCCACCACTATTCAACTTTAAGCCTCACGgtatgcaatcatcctgaaaca----attttatcagcaccagtg------tcttgttttcccatgcaaagttgttactga-ttgttat-tgctgctgcttctgtcaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522569|gb|BU081380.1|BU081380
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|209696849|gb|BW680471.1|BW680471
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATTTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|120495461|gb|EH223628.1|EH223628
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|213604084|gb|DB974210.1|DB974210
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|213601886|gb|DB976175.1|DB976175
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|6666613|gb|AW278072.1|AW278072
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|213595462|gb|DB977912.1|DB977912
EST:     ACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGAAGAACCAAGATCCAGAGCATG
genomic: ACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|209700633|gb|BW670436.1|BW670436
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|209702061|gb|BW670545.1|BW670545
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|9258249|gb|BE346396.1|BE346396
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|209699788|gb|BW655801.1|BW655801
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|209721766|gb|BW666386.1|BW666386
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|208281696|gb|GE080662.1|GE080662
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|12774568|gb|BG239495.1|BG239495
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|254333710|gb|GR848628.1|GR848628
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|214006743|gb|DB987625.1|DB987625
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|26269412|gb|CA820475.1|CA820475
EST:     CAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|254339676|gb|GR857801.1|GR857801
EST:     GGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: GGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|6725763|gb|AW310162.1|AW310162
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|11412139|gb|BF424159.1|BF424159
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATTTGAGATTTTGGTGAGATTGGTTCCCCAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|192321548|gb|FK012898.1|FK012898
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATTTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|120492579|gb|EH220746.1|EH220746
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGT-CCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|13481205|gb|BG510548.1|BG510548
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|254327043|gb|GR836652.1|GR836652
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|254340934|gb|GR854662.1|GR854662
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|213601809|gb|DB982534.1|DB982534
EST:     GCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: GCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
EST: gi|26056318|gb|CA799232.1|CA799232
EST:     CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATG                         AACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG
genomic: CTTGCCAAATGGCCGATTCCTTCCACCACTATTTAATTTCAAATCCCATGgtatgttgat ... cgtgtaccagAACTGAAAGGAGTCCCATCTGAGATTTTGGTGAAATTGGTTCCAGAGCATG