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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTTCTGGGATGAGTCCAGCATTCAATCTTTATGGGTGTACATTAATTGgtaacttcctatccctttgccaaataagtaacattgacgctagtatcaaagttgttatattcctgaaagaatttttgtataccaatcttggcattattgg...

Basic information

species Glycine max
transcript GLYMA19G42530.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42530.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G108416_T01 (Zea mays), 5'ss of exon 12
GTTTCTTCTGGGATGAGTCCAGCATTCAATCTTTATGGGTGTACATTAATTGgtaacttcctatccctttgccaaataagtaacattgacg--ctagtatcaaagttgttatattcctgaaagaatttttgtataccaatcttggcattattgg
||  | ||||| ||||||||||| |||||||||||||||||| | || |||||||     ||  ||     ||   |     |  ||  |   || ||        | ||  ||  |  | | |   |||   | |||   | |   |||||  
GTGACATCTGGAATGAGTCCAGCTTTCAATCTTTATGGGTGTGCCTTGATTGgtattcatcttcccacccacctttttttctatttttgcatccttgtgcatctcctcttcgatcgcacacaaagcattttctttccaccatggattttatt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23064265|gb|BU579038.1|BU579038
EST:     TTCTTCTGGGATGAGTCCAGCATTCAATCTTTATGGGTGTACATTAATTG                         TGCTTGCTGAATGTTTTCCCCCAGTATATGATAATAGACGTGGTATAGTTC
genomic: TTCTTCTGGGATGAGTCCAGCATTCAATCTTTATGGGTGTACATTAATTGgtaacttcct ... aaatatgcagTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATAGACGTGGTATAGTTC