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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACTCGCTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatgatagtttttgaataagctgttctgtttatttaactttgctctactagtttattagttctggctgatgttcttgctgcctgtgtaccag

Basic information

species Glycine max
transcript GLYMA19G41420.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41420.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 12
GATGCCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACTCGCTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatg--atagtttttgaataagctgttctgtt----tatttaactttgctctactagtttattagttctggctgatgttcttgctgcctgtgt--accag
||||||||||||||| | ||||| ||||| || |||||| ||| ||| ||| |||||||||| || || ||||||||| | ||||| |||||  |||| ||||||  ||  |  |  || ||  |  || |      | | |   ||| |  | | |  || |||   |||  || | ||  |||||| | |||  | |||
GATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACCCGCCTGCCAAATGGCCGATTTCTTCCACCACTATTCAACTTTAAGCCTCACGgtatgcaatcatcctgaaacaattttatcagcaccagtgtcttgttttcccatgcaaagttgtta---ctgattgttattgctgctgcttctgtcaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018658|gb|CX705400.1|CX705400
EST:     CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATG                         AATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATG
genomic: CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatgatagt ... tgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATG
EST: gi|26047711|gb|CA784420.1|CA784420
EST:     CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATG                         AATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCC
genomic: CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatgatagt ... tgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCC
EST: gi|9985319|gb|BE659427.1|BE659427
EST:     CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATG                         AATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATG
genomic: CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatgatagt ... tgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATG
EST: gi|12688301|gb|BG154637.1|BG154637
EST:     CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATG                         AATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATG
genomic: CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatgatagt ... tgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATG
EST: gi|214009209|gb|DB990583.1|DB990583
EST:     CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATG                         AATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATG
genomic: CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatgatagt ... tgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATG
EST: gi|58024722|gb|CX711463.1|CX711463
EST:     CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATG                         AATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATG
genomic: CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatgatagt ... tgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATG
EST: gi|254328747|gb|GR833119.1|GR833119
EST:     CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATG                         AATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATG
genomic: CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatgatagt ... tgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATG
EST: gi|208088244|gb|GD889412.1|GD889412
EST:     AATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATG                         AATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATG
genomic: AATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatgatagt ... tgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATG
EST: gi|209725617|gb|BW663106.1|BW663106
EST:     CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATG                         AATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATG
genomic: CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatgatagt ... tgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGCTGAAATTGATTCCAGAACATG