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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAATTGCTGTTGGAGACTGGTTTTTTGATCGGAAAACTGTCAAAGCTATCGACTGTGCTTACCCCTGTGACAATACATGCCATAATCTGGTCTTCAAgtgagtgagaatttattgtcttttcatgtggcaatttgacattttatcaatatcatcagtatgattgccatttgtgtatttaacattcattaattgtaat...

Basic information

species Glycine max
transcript GLYMA19G41030.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41030.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv07s0005g02440.t01 (Vitis vinifera), 5'ss of exon 12
TTGCAATTGCTGTTGGAGACTGGTTTTTTGATCGGAAAACTGTCAAAGCTATCGACTGTGCTTACCCCTGTGACAATACATGCCATAATCTGGTCTTCAAgtgagtgagaatttattgtcttttcatgtggcaatttgacattttatcaatatcatcagtatgattgccattt--gtgtatt-taacattcattaat-tgtaat
|||||    ||||||||||||||| ||| ||||| | | | |||||||| ||||||||| | |||||||||||||| || ||||| || ||||||||||||||||    |  |      |   || |        ||  | || |  |     | |       | ||||||||    | ||| |||||||  ||||  ||    
TTGCAGAGTCTGTTGGAGACTGGTATTTCGATCGAAGACCCGTCAAAGCCATCGACTGTCCATACCCCTGTGACAACACCTGCCACAACCTGGTCTTCAAgtgagcacaacctgcccaccagctcctcctatggcttctccttctcccttctcccttctccctactgccatttcaacgaattgtaacatttcttaagatg----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16345043|gb|BI970638.1|BI970638
EST:     ATCGACTGTGCTTACCCCTGTGACAATACATGCCATAATCTGGTCTTCAA                         TGCTGTTAAATCTGCTGTGGTGGACTACCAGTCCACAAG
genomic: ATCGACTGTGCTTACCCCTGTGACAATACATGCCATAATCTGGTCTTCAAgtgagtgaga ... tgctttgcagTGCTGTTAAATCTGCTGTGGTGGACTACCAGTCCACAAG
EST: gi|15664663|gb|BI702034.1|BI702034
EST:     ATCGACTGTGCTTACCCCTGTGACAATACATGCCATAATCTGGTCTTCAA                         TGCTGTTAAATCTGCTGTGGTGGACTACCAGTCCACAAG
genomic: ATCGACTGTGCTTACCCCTGTGACAATACATGCCATAATCTGGTCTTCAAgtgagtgaga ... tgctttgcagTGCTGTTAAATCTGCTGTGGTGGACTACCAGTCCACAAG