1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatccttttgcatatttaggtgttattattttattatgcaatagagctttaaaatctatatgcagcctttgcttctgtatgaacttactatctgctaatgttttccccctttaatgaataacatcattaatatttgtgttgcttattgattgtggttggtttacag
species | Glycine max |
transcript | GLYMA19G40930.4 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG GCACCAAGTGCTTTAGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGEST: gi|193631506|gb|FK583197.1|FK583197
genomic: TTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTT-GCATCAGGAAAGCCTGCAACAAAGTGGACATACTGG
EST: CAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGGEST: gi|208254213|gb|GE051683.1|GE051683
genomic: CAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG GCACCAAGTGCTTTGCATCAGG-AAGCCTGCAACAAAGTGGACATACTGGGEST: gi|209700236|gb|BW664461.1|BW664461
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGGEST: gi|193379994|gb|FK348232.1|FK348232
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGGEST: gi|207710619|gb|GD691303.1|GD691303
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGGEST: gi|58024431|gb|CX711172.1|CX711172
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGGEST: gi|22932318|gb|BU549457.1|BU549457
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGGEST: gi|208301574|gb|GE100330.1|GE100330
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: CGGCTAAGTACTTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGGEST: gi|208271089|gb|GE066163.1|GE066163
genomic: CAGCTAAG-AC-TCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGGEST: gi|208146629|gb|GD948790.1|GD948790
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG GCACCAAGTGCTTTGCATCAGGAA-GCCTGCAACAA-GTGGACATACTGGGEST: gi|58014455|gb|CX701197.1|CX701197
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGGEST: gi|213608486|gb|DB974743.1|DB974743
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: AGCAGCTAAGACTCTTTGCAGTCCCTTTGACCAGCCAGAACTCCCAGAAG GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGGEST: gi|209707572|gb|BW680942.1|BW680942
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGGEST: gi|193320421|gb|FK285550.1|FK285550
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGGEST: gi|48574957|gb|CO036162.1|CO036162
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatccttttgcatatttaggtgttattattttattatgcaatagagctttaaaatctatatgcagcctttgcttctgtatgaacttactatctgctaatgttttccccctttaatgaataacatcattaatatttgtgttgcttattgattgtggttggtttacag
- - - - - - - - - - - - - - - - - - - - - - GCAGCT