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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatccttttgcatatttaggtgttattattttattatgcaatagagctttaaaatctatatgcagcctttgcttctgtatgaacttactatctgctaatgttttccccctttaatgaataacatcattaatatttgtgttgcttattgattgtggttggtttacag

Basic information

species Glycine max
transcript GLYMA19G40930.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G40930.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv07s0005g02620.t01 (Vitis vinifera), 5'ss of exon 12
GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatccttttgcatatttaggtgttattattttattatgcaatagagctttaaaatctatatgcagcctttgcttctgtatgaacttactatctgctaatgttttccccctttaatgaataacatcattaatatttgtgttgcttattgattgtggttggtttacag
|| || ||    ||||| ||||| ||||||||||| ||||  ||||||||||| ||||||||   ||| ||||||||||||||   ||  |||||||    | |||| | ||  |     | || ||  |      || ||  | || | | | |   |     |||  |||| ||  ||| | |   | |  | |         |                                                          
GAAGTGGAAAAAGATGTGAAAGCAAGGACAAAGGGCGAGACAGGAGCAGCTAAAACTCTTTGTGCTCCTTTTGATCAGCCAGA---CCTTGAAGgtac---cattttactta--tgatcatcatcatcgt------cattattggttaagatttttcttattatcttcacttcagtg-gaagtcaacgtttaatcaaacaaaaaac----------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207746829|gb|GD718792.1|GD718792
EST:     TTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG                         GCACCAAGTGCTTTAGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGG
genomic: TTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTT-GCATCAGGAAAGCCTGCAACAAAGTGGACATACTGG
EST: gi|193631506|gb|FK583197.1|FK583197
EST:     CAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG                         GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
genomic: CAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: gi|208254213|gb|GE051683.1|GE051683
EST:     AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG                         GCACCAAGTGCTTTGCATCAGG-AAGCCTGCAACAAAGTGGACATACTGGG
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: gi|209700236|gb|BW664461.1|BW664461
EST:     AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG                         GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: gi|193379994|gb|FK348232.1|FK348232
EST:     AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG                         GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: gi|207710619|gb|GD691303.1|GD691303
EST:     AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG                         GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: gi|58024431|gb|CX711172.1|CX711172
EST:     AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG                         GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: gi|22932318|gb|BU549457.1|BU549457
EST:     AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG                         GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: gi|208301574|gb|GE100330.1|GE100330
EST:     CGGCTAAGTACTTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG                         GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
genomic: CAGCTAAG-AC-TCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: gi|208271089|gb|GE066163.1|GE066163
EST:     AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG                         GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: gi|208146629|gb|GD948790.1|GD948790
EST:     AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG                         GCACCAAGTGCTTTGCATCAGGAA-GCCTGCAACAA-GTGGACATACTGGG
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: gi|58014455|gb|CX701197.1|CX701197
EST:     AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG                         GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: gi|213608486|gb|DB974743.1|DB974743
EST:     AGCAGCTAAGACTCTTTGCAGTCCCTTTGACCAGCCAGAACTCCCAGAAG                         GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: gi|209707572|gb|BW680942.1|BW680942
EST:     AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG                         GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: gi|193320421|gb|FK285550.1|FK285550
EST:     AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG                         GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
EST: gi|48574957|gb|CO036162.1|CO036162
EST:     AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAG                         GCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG
genomic: AGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatcct ... tggtttacagGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGgtataatccttttgcatatttaggtgttattattttattatgcaatagagctttaaaatctatatgcagcctttgcttctgtatgaacttactatctgctaatgttttccccctttaatgaataacatcattaatatttgtgttgcttattgattgtggttggtttacag

- - - - - - - - - - - - - - - - - - - - - -  GCAGCT