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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTTCTATCTGCCACTGTGCTTTCTCTTATTCCCATGATTCGTCCATTTCAGTGGCAGAGTTTATTGCTCCCTgtgagtcagtgaattcaatgagccatggtttcagattttcctcgtgtcattgtcatgtaggtctaacaatatgttagccttgtttttcag

Basic information

species Glycine max
transcript GLYMA19G35330.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G35330.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G20320.1 (Arabidopsis thaliana), 5'ss of exon 13
GGTGTTCTATCTGCCACTGTGCTTTCTCTTATTCCCATGATTCGTCCATTTCAGTGGCAGAGTTTATTGCTCCCTgtgagtcagtgaattcaatgagccatggtttcagattttcctcgtgtcattgtcatgtaggtctaacaatatgttagccttgtttttcag
|||||| | || || |  || || |||||| | || |||||||| |||||||||||||||||||||||||| || || ||    |||  ||| |     |    || |    || |     |  | ||    | ||  ||||    |  |  |  |  | |||||
GGTGTTTTGTCAGCAATAGTACTGTCTCTTGTACCAATGATTCGGCCATTTCAGTGGCAGAGTTTATTGCTTCCGgtaagc--atgacatcattagaaaaacaattga---cttaccaaaattgtagtttccttggcgtaac----ttctctctgttgtcttcag

upper sequence: GLYMA19G35330.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv07s0005g04510.t01 (Vitis vinifera), 5'ss of exon 11
GGTGTTCTATCTGCCACTGTGCTTTCTCTTATTCCCATGATTCGTCCATTTCAGTGGCAGAGTTTATTGCTCCCTgtgagtcagtga--attcaatgagccatggtttcagattttcctcgtgtcattgtcatg-taggtctaacaatatgttagccttgtttttcag--------
||||||||||| ||||| ||| | ||||||||||||||||||||||||||| | |||||||| |||||||| ||||| |||  |  |  ||||    | |  ||||||    ||    |    |  || | ||  || || | | | | |  | ||| |   | | |         
GGTGTTCTATCGGCCACAGTGTTATCTCTTATTCCCATGATTCGTCCATTTGAATGGCAGAGCTTATTGCTTCCTgtaagtttgacagcattctgaaatcactggtttttttttagtttgaaatttttttgataatatgtatgaaattttagt-gccatacatataacattgtaga