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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcatttgggttctaacaaacactcttctaattcattattcatcaattgtttatttatgcataatctaatatatgaatgctcaatctgattctatag

Basic information

species Glycine max
transcript GLYMA19G30460.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193515777|gb|FK473353.1|FK473353
EST:     TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG                         GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: gi|193618949|gb|FK569363.1|FK569363
EST:     TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG                         GCTTTTGTTAGTGAATACGCTGTG
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTG
EST: gi|193386273|gb|FK349451.1|FK349451
EST:     TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG                         GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: gi|208154130|gb|GD956163.1|GD956163
EST:     TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG                         GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: gi|193354959|gb|FK322568.1|FK322568
EST:     TTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG                         GC-TTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
genomic: TTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: gi|193511194|gb|FK468463.1|FK468463
EST:     CGACAACACATCACGATCTGGTCCAAAG                         GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
genomic: CGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: gi|193471512|gb|FK436613.1|FK436613
EST:     TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAGG                         GCTTTTGTTAGTGAATACGCTGTG
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTG
EST: gi|208052506|gb|GD851341.1|GD851341
EST:     TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG                         GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: gi|193390214|gb|FK355448.1|FK355448
EST:     TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG                         GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: gi|193584136|gb|FK540284.1|FK540284
EST:     TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAGG                         GCTTTTGTTAGTTGTAATACGCTGTG
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGT-G-AATACGCTGTG
EST: gi|208058249|gb|GD860254.1|GD860254
EST:     TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG                         GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: gi|208112736|gb|GD909731.1|GD909731
EST:     TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG                         GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: gi|193703732|gb|FK640934.1|FK640934
EST:     TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG                         GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: gi|193583057|gb|FK539685.1|FK539685
EST:     TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG                         GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: gi|208288352|gb|GE084365.1|GE084365
EST:     TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAG                         GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
EST: gi|193703286|gb|FK638262.1|FK638262
EST:     TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAGG                         GCTTTTGTTAGTGAA
genomic: TGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAA
EST: gi|6724799|gb|AW309198.1|AW309198
EST:     CTAAGTTCGACAACACATCACGATCTGGTCCAAAG                         GCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC
genomic: CTAAGTTCGACAACACATCACGATCTGGTCCAAAGgtttgatcat ... gattctatagGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTC