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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGTACCAAAATTTGATTACACAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACACTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagcttgatgcattctgtgtttttttttgtcttcaaatcaaatcagtatattgataatttttgttaatgtttttagaattgtttagaaagtaggatagggctggctgttctaattgtacctgaaactggccagcttatttctgcacaaccctcaattctttcttgctttggtttgactctag

Basic information

species Glycine max
transcript GLYMA19G27800.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os11g32490.1 (Oryza sativa), 5'ss of exon 12
TCAGTACCAAAATTTGATTACACAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACACTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagcttgatgcattctgtgtttttttttgtcttcaaatcaaatcagtatat--tgataatttttgttaatgtttttagaattgtttagaaagtaggatagggctggctgttctaattgtacctgaaactggccagcttatttctgcacaaccctcaattctttcttgctttggtttgactctag
    ||||| |||||||||||| | || |||||||| ||||| ||||||||||| || || |||||||| ||||||||||||||||| || || || ||||||  ||  | | ||  | |||      | |||  | | |  || |    |  ||||||     | |  | |   ||||  |||  |                                                                                                         
GTCTTACCAGAATTTGATTACAAAATCGATGTATGATAAACAGCTTGACAGTGGGAAAGGAACACTTCTGCATTTGTGTGATGATGTGATCCAGCAAGAAgta--tggaaccatgggggatttc----tctttgatatatataacttgtctttgtatatgccactgacatataa-aatgggtttgcag--------------------------------------------------------------------------------------------------------

upper sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os12g29550.1 (Oryza sativa), 5'ss of exon 12
TCAGTACCAAAATTTGATTACACAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACACTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagcttgatgcattctgtgtttttttttgtcttcaaatcaaatcagtatattgataatttttg---ttaatgtttttagaattgtttagaaagtaggatagggctggctgttctaattgtacctgaaactggccagcttatttctgcacaaccctcaattctttcttgctttggtttgactctag
    || ||||||||||| ||| | ||||||||||||||||| ||||| ||||| || || ||||| |||||  ||||||||||||| || || || |||||| |   ||  |  |             | ||||   |   || |  |||   ||| ||  | ||  |      | ||  | |||   |  || |  |||                                                                                            
AATATATCAAAATTTGATCACAAAATCAATGTATGACAAACAGCTTGATAGTGGGAAAGGAACACTGCTTCACCTGTGTGATGATGTGATACAGCAAGAAgtacgaaacaaatgaa----------acctcttttgcaccataagttgaatatatatctttgttatcctgagaactgatactcttatcttctttcatgaag--------------------------------------------------------------------------------------------

upper sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g70390.1 (Oryza sativa), 5'ss of exon 12
TCAGTACCAAAATTTGATTACACAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACACTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagcttgatgcattctgtgtttttttttgtcttcaaatcaaatcagtatattgataatttttgttaatgtttttagaattgtttagaaagtaggatagggctggctgttctaattgtacctgaaactggccagcttatttctgcacaaccctcaattctttcttgctttggtttgactctag
    || |||||  | || || || ||||||||||||||||| || || ||||| || || |||||||| ||| | ||||||||||| ||||| ||||||||| ||  |  | |  || | |   || ||     |     || |||| |    | |  | | |||| || || || ||| | |     |||   || |  |||  | |  |                                                                              
AACATATCAAAACCTAATAACTCAATCAATGTATGACAAACAGCTAGATAGTGGGAAAGGCACACTTCTCCATCTCTGTGATGATGTGATTCAGCAGGAAgtaggtctc--catattgtagtacttgattcagaataag--catatcagagacttgtgctcacaattatt-ttcatctttgtgg-----tttctgaattctgat--gtccag------------------------------------------------------------------------------

upper sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G161168_T01 (Zea mays), 5'ss of exon 12
TCAGTACCAAAATTTGATTACACAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACACTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagcttgatgcattctgtgtttttttttgtcttcaaatcaaatcagtatattgataatttttgttaatg-tttttagaattgtttagaaagtaggatagggctggctgttctaattgtacctgaaactggccagcttatttctgcacaaccctcaattctttcttgctttggtttgactctag
    |||||||| || || || || |||||||||||||||||||| || ||||| || || ||||| || ||  | ||||||||||| ||||||||||| ||| || |   ||   | || || ||| ||| ||  |      ||| |||| | ||         ||    || ||  ||| |   | | |||  |   || |                                                                                        
AACCTACCAAAACTTAATCACTCAATCAATGTATGACAAACAACTAGATAGTGGGAAAGGCACACTCCTCCACCTCTGTGATGATGTGATTCAACAGGAGgtaggtccacactc--tacactcagtgctttcttgaggacc--aataaaataaatactcactccgttccgatttataatttgtttgactttttttattctaagt---------------------------------------------------------------------------------------

upper sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G011136_T01 (Zea mays), 5'ss of exon 12
TCAGTACCAAAATTTGATTACACAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACACTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagcttgatgcattctgtgtttttttttgtcttcaaatcaaatcagtatattgataatttttgttaatgtttttagaattgtttagaaagtaggatagggctggctgttctaattgtacctgaaactggccagcttatttctgcacaaccctcaattctttcttgctttggtttgactctag
   ||| || |||||||||||| | ||||||||||||||||| ||||| ||||| || || || |||||||| || || ||||| || || || || |||||| |    || |  |  |     ||            ||||||| || |      ||   ||   || |||| |    | |   ||  |  |    ||||                                                                                         
AATGTATCAGAATTTGATTACAAAATCAATGTATGACAAACAGCTTGATAGTGGGAAAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAAgtatgaaatagttgaaaac----cgta-----------cttcaaaccacaagctcgtacctatgccttatgttcactgatatcccatcatccatggtgtag-----------------------------------------------------------------------------------------

upper sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G052279_T01 (Zea mays), 5'ss of exon 9
TCAGTACCAAAATTTGATTACACAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACACTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagcttgatgcattctgtgtttttttttgtcttcaaatcaaatcagtatattgataatttttgttaatgtttttagaattgtttagaaagtaggatagggctggctgttctaattgtacctgaaactggccagcttatttctgcacaaccctcaattctttcttgctttggtttgactctag
    |||||||| || || || || |||||||||||||||||||| |  ||||| || || ||||| || ||  | ||||||||||| ||||||||||| ||| || |   ||   | || || ||| ||| ||  |      ||| |||| | ||         ||    || ||  |||        |||  |   || | |                                                                                      
AACCTACCAAAACTTAATCACTCAATCAATGTATGACAAACAACTAGTTAGTGGGAAAGGCACACTCCTCCACCTCTGTGATGATGTGATTCAACAGGAGgtaggtccacactc--tacactcagtgctttcttgaggacc--aataaaataaatactccctccgttccgatttataatttgtttgacttttttattctaagtt--------------------------------------------------------------------------------------

upper sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G19340.1 (Arabidopsis thaliana), 5'ss of exon 12
TCAGTACCAAAATTTGATTACACAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACACTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagcttgatgcattctgtgtttttttttgtcttcaaatcaaatcagtatattgataatttttgttaatgtttttagaattgtttagaaagtaggatagggctggctgttctaattgtacctgaaactggccagcttatttctgcacaaccctcaattctttcttgctttggtttgactctag
|  ||| || || ||||| || |||||||||||||| |||||||| ||||| || | ||| || || || ||||||||||||||||| ||||| || ||||||||| || || |||   |   |||  |    |        ||| |  |   | ||  | ||                                                                                                                               
TACGTATCAGAACTTGATAACTCAGTCAATGTATGATAAACAACTAGACAGCGGGAGGGGAACGCTACTACATTTGTGTGATGATGTGATTCAGCAAGAAgtaagttcccgcatga-atacattgtaatacaatagaaacaaaaagcttacttggattgtaatgcacag-------------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 12
TCAGTACCAAAATTTGATTACACAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACACTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagcttgatgcattctgtgtttttttttgtcttcaaatcaaatcagtatattgataatttttgttaatgtttttagaattgtttagaaagtaggatagggctggctgttctaattgtacctgaaactggccagcttatttctgcacaaccctcaattctttcttgctttggtttgactctag
|   || || || || || ||||| || |||||||| || || || || |||||||||||||| |||||||| ||||||||||| || |||||||| ||||||||| | |   |   | | | |   || | |    | ||    ||      | ||| | |  ||  || ||  | ||  |  ||   |  ||||| |                                                                                           
TGCATATCAGAACTTAATCACACAATCCATGTATGATAAGCAGCTGGATAGTGGAAAGGGTACTCTTCTTCACTTGTGTGATGACGTGATTCAACAAGAAgtaagttctaaaatagaggaattttaattctatccaatattttggtctttcttg-atagtcaatatgatttttttttttggtgaaaccatacagaaaattt-----------------------------------------------------------------------------------------