1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TTCACTTGATCTTTTGGCGAGTGGAGATGGTAAAAAGAAAGCTACCATTGTTGGTGATGTATATATTCATCCATCTGCCAAAGTTCATCCATCTGCAAAGgtagttccgtagctttcacaagattgtaaatacttttttaaacaaaagttaaattggcactagtatcttgatgcattttctgctgtaaactactaaagcc...
species | Glycine max |
transcript | GLYMA19G06900.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TTGGTGATGTATATATTCATCCATCTGCCAAAGTTCATCCATCTGCAAAG CTTGGTCCCAATGTTTCTATCTCAGCAAATGTTCGTGTAGGTGCTGGTGTCEST: gi|193567058|gb|FK523311.1|FK523311
genomic: TTGGTGATGTATATATTCATCCATCTGCCAAAGTTCATCCATCTGCAAAGgtagttccgt ... tcttgaacagCTTGGTCCCAATGTTTCTATCTCAGCAAATGTTCGTGTAGGTGCTGGTGTC
EST: CCAAAGTTCATCCATCTGCAAAG CTTGGTCCCAATGTTTCTATCTCAGCAAA-GTTCGTGTAGGTGCTGGTGTCEST: gi|6963514|gb|AW432207.1|AW432207
genomic: CCAAAGTTCATCCATCTGCAAAGgtagttccgt ... tcttgaacagCTTGGTCCCAATGTTTCTATCTCAGCAAATGTTCGTGTAGGTGCTGGTGTC
EST: TTGGTGATGTATATATTCATCCATCTGCCAAAGTTCATCCATCTGCAAAG CTTGGTCCCAATGTTTCTATCTCAGCAAATGTTCGTGTAGGTGCTGGTGTCEST: gi|193519148|gb|FK474913.1|FK474913
genomic: TTGGTGATGTATATATTCATCCATCTGCCAAAGTTCATCCATCTGCAAAGgtagttccgt ... tcttgaacagCTTGGTCCCAATGTTTCTATCTCAGCAAATGTTCGTGTAGGTGCTGGTGTC
EST: TTGGTGATGTATATATTCATCCATCTGCCAAAGTTCATCCATCTGCAAAG CTTGGTCCCAATGTTTCTATCTCAGCA
genomic: TTGGTGATGTATATATTCATCCATCTGCCAAAGTTCATCCATCTGCAAAGgtagttccgt ... tcttgaacagCTTGGTCCCAATGTTTCTATCTCAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCACTTGATCTTTTGGCGAGTGGAGATGGTAAAAAGAAAGCTACCATTGTTGGTGATGTATATATTCATCCATCTGCCAAAGTTCATCCATCTGCAAAGgtagttccgtagctttcacaagattgtaaatacttttttaaacaaaagttaaattggcactagtatcttgatgcattttctgctgtaaactactaaagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaaa