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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGGGTCCTTGTTGGGGtgagtacaaggtgatttttttttttctgttagtaagtaatgggtgcattataattgcaaaaactttctttttcacttttagaatctgttcataatttgat...

Basic information

species Glycine max
transcript GLYMA18G52270.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G52270.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G13550.1 (Arabidopsis thaliana), 5'ss of exon 12
-ATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGGGTCCTTGTTGGGGtgagtaca-aggtgatttttttttttctgttag---taagtaatgggtgcattataattgcaaaaactttct----ttttcacttttagaatctgttcataatttgat
 |||||  | |||||||| || ||||  ||||||   ||||||||||| |||||||| | |||||||||| | || || ||||| || ||||||||||| |||||||   || |  | |  | | ||| | |     ||| |||||  |  || ||   |||| |  | |        |  | |  ||  ||| | |||| | |||   
TATTTTCCTCTGGCGTGTGGACAAGAGGGATTTTTCGCTTTGGACCATCACTAGCACCATAACATTGTTCTTCGGAATAGAGATCGGTGTCCTTGTTGGTgtgagtattcagatactatagtatgttcagattcatctaactaatgtatatatgatttctgcataggcctctaaggactcacgcagttgcaatgttttca-attttag-

upper sequence: GLYMA18G52270.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G12520.2 (Arabidopsis thaliana), 5'ss of exon 13
-ATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGGGTCCTTGTTGGGGtgagta----caaggtgattt--ttttttttctgttagtaagtaatgggtgcattataattgcaaaaactttctttttcacttttagaatctgttcataatttgat----------------------------------------------------
 || ||| |||||||||| || |||| |||||||  |||||||||||| |||||||| || || |||||| |||| || ||||||||||||||  |||| |||||||    ||   | | |    ||| ||||||| ||    | ||   | | ||  ||||  ||  | |     | |      ||| ||     | ||  |  ||                                                    
AATCTTTCTGTGGCGTGTGGACAAGAGAGATTTTACTCTTTGGACCATCACTAGCACCACCACTTTGTTCTTTGGAATAGAGATTGGGGTCCTCATTGGTgtgagtatgctcatactcactcagctttatttctgt-agctgatcatatct-ctttgaaattaaaaggagtgatgatgttgaaagtagtataaccacctacatgaattgtgcaacgcttttaaaggactcacagagttgtaatgcttggaatttttcag

upper sequence: GLYMA18G52270.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 5'ss of exon 12
-ATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGGGTCCTTGTTGGGGtgagtac--aaggtgatttttttt--tttctgttagtaagt-aatgggtgcattataattgcaaaaactttctttttcacttttagaatctgttcataatttgat
 |||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||  |||||||||||||||||||||||||| |||||||||||||| || ||  || |   ||| |  |  |  ||  ||  |  |  ||   |     | |  ||  |||  ||  |   | | | ||   || |     | |      
TATTTTTTTATGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCCTTACCAGCACTATGACATTGTTCCTTGGTATTGAGATTGGTGTCCTTGTTGGGgtaagaacttaaagcagtttatgctaatgcctactataagattgatcattatccaacacatgtgaaattttcatgagttattattcagatatccctttga------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300273|gb|FG988780.1|FG988780
EST:     GGTCCTTGTTGGGG                         TTGGGGTTTCACTTGCGTTTGTCATTCATGAGTCAGCAAATCCACATATTG
genomic: GGTCCTTGTTGGGGtgagtacaag ... aaattgtaggTTGGGGTTTCACTTGCGTTTGTCATTCATGAGTCAGCAAATCCACATATTG