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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCATGTGCACACCCTTTCTTTGATGATCTGCGAGAACCAAATGCATGCTTGCCAAATGGGCAATCATTGCCTCCATTGTTCGATTTCACTGCTCAAGGtaagttggtgagaagcttaccattatcagttaagtaaaatcatttaccatttcttacattgaaaaaacaatgcaga

Basic information

species Glycine max
transcript GLYMA18G45960.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G45960.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G61160.2 (Arabidopsis thaliana), 5'ss of exon 12
-AAGCATGTGCACACCCTTTCTTTGATGATCTGCGAGAACCAAATGCATGCTTGCCAAATGGGCAATCATTGCCTCCATTGTTCGATTTCACTGCTCAAGGtaagttggtgagaagcttaccattatcagttaagtaaaatc---atttaccatttcttacattgaaaaaacaatgcaga
 |||||||||||||||| ||||| ||||||||| |||| || |  |||| |||||| |||||   | || | ||||||||||| |||||||| |||||||||   ||||  |  |   |    || |    ||| | |  ||   |      | | ||||  ||          ||||| 
GAAGCATGTGCACACCCATTCTTCGATGATCTGAGAGACCCGAGAGCATCCTTGCCTAATGGAAGAGCACTTCCTCCATTGTTTGATTTCACAGCTCAAGgtt--ttggcaactacactttgcttcttttataacttacctcccaaccggaaaatgcttatctttctct--tcttgcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933666|gb|BU550805.1|BU550805
EST:     TTGCCAAATGGGCAATCATTGCCTCCATTGTTCGATTTCACTGCTCAAGA                         ACTGGCAGGTGCACCTGATGAGTTGCGGCGACGTCTCATTCCTGAGCATGC
genomic: TTGCCAAATGGGCAATCATTGCCTCCATTGTTCGATTTCACTGCTCAAGGtaagttggtg ... acaatgcagaACTGGCAGGTGCACCTGATGAGTTGCGGCGACGTCTCATTCCTGAGCATGC
EST: gi|151396011|gb|EV265888.1|EV265888
EST:     TTGCCAAATGGGCAATCATTGCCTCCATTGTTCGATTTCACTGCTCAAGA                         ACTGGCAGGTGCACCTGATGAGTTGCGGCGACGTCTCATTCCTGAGCATGC
genomic: TTGCCAAATGGGCAATCATTGCCTCCATTGTTCGATTTCACTGCTCAAGGtaagttggtg ... acaatgcagaACTGGCAGGTGCACCTGATGAGTTGCGGCGACGTCTCATTCCTGAGCATGC
EST: gi|10843847|gb|BF067095.1|BF067095
EST:     TTGCCGAATGGGCAATCATTGCCTCCATTGTTCGATTTCACTGCTCAAGA                         ACTGGCAGGTGCACCTGATGAGTTGCGGCGACGTCTCATTCCTGAGCATGC
genomic: TTGCCAAATGGGCAATCATTGCCTCCATTGTTCGATTTCACTGCTCAAGGtaagttggtg ... acaatgcagaACTGGCAGGTGCACCTGATGAGTTGCGGCGACGTCTCATTCCTGAGCATGC