1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAggtgatacataactaggatcattctgttatttcttacgaaaaaatagtttatgtactaacaatataaatagtctgtacactgtcattcaataaatagtta...
species | Glycine max |
transcript | GLYMA18G44820.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAA GATCCACTTGGTGTACAAGGTAAAA-GGTTAGGATGGAAGGTGATCAAGAGEST: gi|51335838|gb|CO979704.1|CO979704
genomic: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAggtgatacat ... aacatcgtcaGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAG
EST: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAA GATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAGEST: gi|207751779|gb|GD723996.1|GD723996
genomic: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAggtgatacat ... aacatcgtcaGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAG
EST: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAA GATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAGEST: gi|192330118|gb|FK019773.1|FK019773
genomic: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAggtgatacat ... aacatcgtcaGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAG
EST: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAA GATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAGEST: gi|208198385|gb|GD995476.1|GD995476
genomic: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAggtgatacat ... aacatcgtcaGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAG
EST: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAA GATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAGEST: gi|31309897|gb|CD395100.1|CD395100
genomic: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAggtgatacat ... aacatcgtcaGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAG
EST: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAA GATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAGEST: gi|13312579|gb|BG406230.1|BG406230
genomic: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAggtgatacat ... aacatcgtcaGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAG
EST: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAA GATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAGEST: gi|193558294|gb|FK514903.1|FK514903
genomic: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAggtgatacat ... aacatcgtcaGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAG
EST: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAA GATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATAGGAAAGGTGATCAAGEST: gi|193301284|gb|FK266401.1|FK266401
genomic: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAggtgatacat ... aacatcgtcaGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGAT-GGAA-GGTGATCAAG
EST: AGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAA GATCCACTTGGTGTACAAGGT-AAAAGGTTAGGATGGAAGGTGATCAAGAGEST: gi|193495866|gb|FK458558.1|FK458558
genomic: AGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAggtgatacat ... aacatcgtcaGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAG
EST: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAA GATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAGEST: gi|193490814|gb|FK455939.1|FK455939
genomic: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAggtgatacat ... aacatcgtcaGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAGAG
EST: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAA GTATTCCACTTGGTGTACAAGGT-AAAAGGTTAGGATGGAAGGTGATCAAGEST: gi|208186280|gb|GD984585.1|GD984585
genomic: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAggtgatacat ... aacatcgtcaG-A-TCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGATCAAG
EST: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAA GATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGAT
genomic: AAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAggtgatacat ... aacatcgtcaGATCCACTTGGTGTACAAGGTAAAAAGGTTAGGATGGAAGGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTCCTCTTCTTCTTGGCTGTGATGTTAGGAATATGACTAAAGAGACCATGGAGATAGTAGCAAACAAGGAAGTTATTTCAGTTAACCAAggtgatacataactaggatcattctgttatttcttacgaaaaaatagtttatgtactaacaatataaatagtctgtacactgtcattcaataaatagtta
- - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgaaaaaa