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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAATATTCCCATATGTTCTAAAGCTGTTACAAACAACAACACCAGAACTACGACAGATCCTTGTATTCATATGGACAAAGATTCTTGCACTTGATAAGgtacttttggagtagaataatttgtcttaagataatgtaaattacaccggttttgcttaaaatgtaaatggctaaatgcatgtttggtttagcttatttt...

Basic information

species Glycine max
transcript GLYMA18G44210.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 12
TGGAATATTCCCATATGTTCTAAAGCTGTTACAAACAACAACACCAGAACTACGACAGATCCTTGTATTCATATGGACAAAGATTCTTGCACTTGATAAGgta--cttttggagtagaataatttgtctt--------aagataatg-taaattacaccggttttgcttaaaatgtaaatgg--ctaaatgcatgtttggtttagcttatttt
|||||||||||||||||| || |||||  | |||||||||||    || ||| |||||||||| || |||||||||||||| |||||||||||||| ||||||    | ||  ||   || |  | | ||        |||||  || |     |  ||  ||||  |||   |  |||| |  |||  |   | | |||             
TGGAATATTCCCATATGTGCTGAAGCTTCTGCAAACAACAACGAATGAGCTAAGACAGATCCTGGTTTTCATATGGACAAAAATTCTTGCACTTGACAAGgtaaatatctgatgttccatgagctattttttgggaggaagatggtggtttgccatgcctctttttgttattctacaaattgtgctagttctttctgtgg-------------

upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 12
TGGAATATTCCCATATGTTCTAAAGCTGTTACAAACAACAACACCAGAACTACGACAGATCCTTGTATTCATATGGACAAAGATTCTTGCACTTGATAAGgtacttttggagtagaataatttgtcttaagataatgtaaattacaccggttttgcttaaaatgtaaatggctaaatgcatgtttggtttagcttatttt---
||||||||  || |  ||  | |||||| | |||||||||||    || ||||| ||||| ||||| ||||||||||||||||| || |||||||||||||||| |   |  | | ||  | | |  |       |     ||| |||  |  | |||    | |    |    | |       ||  |  | ||  ||    
TGGAATATATCCTTGCGTAGTGAAGCTGCTGCAAACAACAACTATTGAGCTACGGCAGATTCTTGTTTTCATATGGACAAAGATCCTAGCACTTGATAAGgtacatgcagtttcgtatg-tctctgcttgttcgtttcttgttatacctctgctacttcc--ttttggggatgcattattaacgtgactctgttttcttcatg

upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 12
TGGAATATTCCCATATGTTCTAAAGCTGTTACAAACAACAACACCAGAACTACGACAGATCCTTGTATTCATATGGACAAAGATTCTTGCACTTGATAAGgtacttttggag---tagaataatttgtcttaagataatgtaaattacaccggttttgcttaaaatgtaaatggctaaatgcatgtttggtttagcttatttt
||||||||| ||||||||||| |||||||| ||||||||||| |||||| || |||| || |||||||| |||||||||||||| ||||||||||||||||||   || ||        || |||| | | |  |||   |  | ||    |    ||   ||  ||  | |     ||  |||| |   | |    |     
TGGAATATTTCCATATGTTCTGAAGCTGTTGCAAACAACAACTCCAGAATTAAGACAAATTCTTGTATTTATATGGACAAAGATCCTTGCACTTGATAAGgtatacttagaagtcctccattatttttttcacaatatatttgagtat-ttgaggatgacaaagttgctactattagaagacatgctccatatgttcttga--

upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S26_271V6.1 (Physcomitrella patens), 5'ss of exon 12
TGGAATATTCCCATATGTTCTAAAGCTGTTACAAACAACAACACCAGAACTACGACAGATCCTTGTATTCATATGGACAAAGATTCTTGCACTTGATAAGgtacttttggagta--gaataatttgtcttaagataatgtaaattacaccggttttgcttaaaatgtaaatggctaaatgc-atgtttggtttagcttatttt-
 ||||||||||| ||||| || |||||| | ||| ||||  |  | ||  | || || || |||||||| ||||||||||||||||| || ||||| |||||  | ||    |   | ||| ||| |||     | || |   | | |   ||| |   |  || |    |   |   |   | ||   |||||||||      
AGGAATATTCCCCTATGTCCTTAAGCTGCTGCAAGCAACGGCTACTGATTTGCGGCAAATTCTTGTATTTATATGGACAAAGATTCTAGCTCTTGACAAGgtgttgttctcattctgtatagtttatctc----ttattttgttcagaatagttctatatgtaagggctctttgtgggtatgaagtgctgtttagcttgcgcca