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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACTTTGAAGGAAAAGGTGAAAGAGAATAATAGAAAGGAGGCGCAATTTTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattccatcacggttttatggtatgtttccctttgggggggatcaattgccaatttagttgtgctttttggcttttgctgttgatgtatattgggggccttgtgttattatactattctttttggcttgcag

Basic information

species Glycine max
transcript GLYMA18G32830.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193417464|gb|FK385018.1|FK385018
EST:     TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAA
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAA
EST: gi|208102659|gb|GD897400.1|GD897400
EST:     TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|193435384|gb|FK401928.1|FK401928
EST:     TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|208044585|gb|GD837957.1|GD837957
EST:     ATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: ATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|208292360|gb|GE092432.1|GE092432
EST:     TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|58015099|gb|CX701841.1|CX701841
EST:     TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|208276245|gb|GE076121.1|GE076121
EST:     CTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: CTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|208147761|gb|GD947584.1|GD947584
EST:     TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|193355351|gb|FK319936.1|FK319936
EST:     TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|208096910|gb|GD894647.1|GD894647
EST:     TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|254340644|gb|GR854372.1|GR854372
EST:     TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|193425532|gb|FK387881.1|FK387881
EST:     TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|208323835|gb|GE124366.1|GE124366
EST:     TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|213592147|gb|DB983303.1|DB983303
EST:     TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|193706286|gb|FK645826.1|FK645826
EST:     AGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: AGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|193358195|gb|FK322763.1|FK322763
EST:     TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|193327885|gb|FK296860.1|FK296860
EST:     TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: T-ATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|193602266|gb|FK558347.1|FK558347
EST:     CAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: CAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|31475387|gb|CD417415.1|CD417415
EST:     TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCCGGGGTTGACAACTAAAT
EST: gi|9440155|gb|BE440665.1|BE440665
EST:     TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT                         AAACCAGCTACGAAGTACCAACGGTATTGAATCC
genomic: TTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattc ... tggcttgcagAAACCAGCTACGAAGTACCAACGGTATTGAATCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGACTTTGAAGGAAAAGGTGAAAGAGAATAATAGAAAGGAGGCGCAATTTTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATgtgagtattccatcacggttttatggtatgtttccctttgggggggatcaattgccaatttagttgtgctttttggcttttgctgttgatgtatattgggggccttgtgttattatactattctttttggcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG